AdamaJava / adamajava

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Update htsjdk to 4.0.2 #340

Closed holmeso closed 9 months ago

holmeso commented 9 months ago

Description

Update to the latest (4.0.2) version of htsjdk.

A few tweaks (as prescribed by my IDE) to qbamfilter.

Addition of test in qbamfilter that creates CRAM and checks MD tag

Type of change

Library update

How Has This Been Tested?

Unit tests pass

Are WDL Updates Required?

No

Checklist:

[X] My code follows the style guidelines of this project
[X] I have performed a self-review of my own code
[X] I have commented my code, particularly in hard-to-understand areas
[X] I have made corresponding changes to the documentation
[X] My changes generate no new warnings
[X] I have added tests that prove my fix is effective or that my feature works
[X] New and existing unit tests pass locally with my changes