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Adamtaranto / frisk

Screen genomic scaffolds for regions of unusual k-mer composition.
http://adamtaranto.github.io/frisk/
GNU General Public License v3.0
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Driving Kmer reports #20

Open Adamtaranto opened 8 years ago

Adamtaranto commented 8 years ago

Which kmers drive divergence from reference population in windows/features with extreme KLI scores.

Helper script: Given sequence (string or fasta) and Self-kmer pickle file, report observed kmers ranked by KLI. If given a multi-fasta of anom sequences, return mean and var of KLI for each observed kmer.

Adamtaranto commented 8 years ago

Must be an existing method to compare sets of ranked lists and extract consistently high ranking variables...