Adamtaranto / frisk

Screen genomic scaffolds for regions of unusual k-mer composition.
http://adamtaranto.github.io/frisk/
GNU General Public License v3.0
2 stars 3 forks source link

Migrate t-SNE to Sci-Kit-Learn Implementation #30

Closed Adamtaranto closed 8 years ago

Adamtaranto commented 8 years ago

Migrate t-SNE clustering option to the SKL implementation for consistency with PCA method.

http://alexanderfabisch.github.io/t-sne-in-scikit-learn.html http://scikit-learn.org/stable/modules/generated/sklearn.manifold.TSNE.html https://www.oreilly.com/learning/an-illustrated-introduction-to-the-t-sne-algorithm

Adamtaranto commented 8 years ago

Done! Also kept custom implementation as seems to yield better structure.

Use as PY-TSNE or SKL-TSNE