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Adamtaranto / frisk

Screen genomic scaffolds for regions of unusual k-mer composition.
http://adamtaranto.github.io/frisk/
GNU General Public License v3.0
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pybedtools is temperamental AF - Preprocess host GFF annotations #38

Open Adamtaranto opened 8 years ago

Adamtaranto commented 8 years ago

pybedtools bugs out when making BED object from gff3 records that have different numbers of columns / metadata fields, is also uppity about line endings.

Find package or write function to read in gff to pandas then --> convert to BED.