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Adamtaranto / quick-ortho-fetch

Take an XML formatted multiblast result, extract genbank IDs for best x hits to each query and download a non-redundant list of matching seqs from ncbi.
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No module named Bio #3

Open ortizem opened 7 years ago

ortizem commented 7 years ago

Hi I am trying to execute the quickOrtho.py script but I get the following error:

Tracback (most recent call last): File "quickOrtho.py", line 17, in from Bio import SEqIO; #For .fasta output ImportError: No module named Bio

I would appreciate your help on a workaround this issue.

Adamtaranto commented 7 years ago

The script is trying to import a module from Biopython, which is not installed. try: pip install biopython