Integrate latest lung model output

AdaptiveComputationLab / simcov

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Open akilandrews opened 2 years ago

akilandrews commented 2 years ago

Mod simcov to accept the latest branching airways model output "airways.dat" file format.

akilandrews commented 2 years ago

Added new branch "branching_airways_3min_model" and validated that results show marginal percentage difference.

akilandrews commented 2 years ago

[x] Add columns to .stats of num pts where infl occured 1. all cells 2. non-air cells
[x] Add sample to .vtk: with non-air grid cell positions where infl occured
[x] Remove chempts and chemokines column
[ ] Rename all variables and references to chemokines and call them inflammation or inflam_signal