missing data in genotype file

AdmiralenOla / Scoary

Pan-genome wide association studies

GNU General Public License v3.0

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missing data in genotype file #109

Open snackens opened 1 year ago

snackens commented 1 year ago

Hi, Thank you for this convenient tool.

Are there any way to ignore missing data(- or NA) in genotype data? I converted vcf to present/absent file. Some samples have missing data due to sequence problem. I specified "-" in present/absent data, but these weren't ignored.

Thanks,