Integrate Human Protein Atlas and TCGA tissue expression data - Githubissues

AdrianBZG / storm-bio-sources

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Integrate Human Protein Atlas and TCGA tissue expression data #5

Closed AdrianBZG closed 4 years ago

AdrianBZG commented 4 years ago

TCGA: https://xenabrowser.net/datapages/?dataset=EB%2B%2BAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.xena&host=https%3A%2F%2Fpancanatlas.xenahubs.net&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443

HPA: https://amp.pharm.mssm.edu/Harmonizome/dataset/HPA+Tissue+Gene+Expression+Profiles

AdrianBZG commented 4 years ago

HPA from here: https://github.com/intermine/humanmine-bio-sources/blob/master/protein-atlas-rna/src/main/java/org/intermine/bio/dataconversion/ProteinAtlasRNAConverter.java

AdrianBZG commented 4 years ago

TCGA expression integrated.