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AgResearch / data_prism

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kmer_prism crashes on some tag count files #1

Open afmcc opened 6 years ago

afmcc commented 6 years ago

Traceback (most recent call last): File "/dataset/hiseq/active/bin/DECONVQC/kmer_prism.py", line 469, in main() File "/dataset/hiseq/active/bin/DECONVQC/kmer_prism.py", line 461, in main distributions = build_kmer_distributions(options) File "/dataset/hiseq/active/bin/DECONVQC/kmer_prism.py", line 289, in build_kmer_distributions options["kmer_size"], options["input_driver_config"])) File "/dataset/hiseq/active/bin/DECONVQC/kmer_prism.py", line 251, in build_kmer_distribution distdata = build(distob, use="singlethread") File "/bifo/active/hiseq/bin/DECONVQC/data_prism.py", line 862, in build results.append(build_part(arg)) File "/bifo/active/hiseq/bin/DECONVQC/data_prism.py", line 836, in build_part return distob.get_partial_distribution(slice_number) File "/bifo/active/hiseq/bin/DECONVQC/data_prism.py", line 139, in get_partial_distribution raw_values = self.get_raw_values_stream() File "/bifo/active/hiseq/bin/DECONVQC/data_prism.py", line 120, in get_raw_values_stream file_streams = [self.file_to_stream_func(filename, *self.file_to_stream_func_xargs) for filename in self.input_filenames] File "/dataset/hiseq/active/bin/DECONVQC/kmer_prism.py", line 145, in tag_count_from_tag_count_file while( common_prefix_length < min(len(sorted_tuples[0]), len(sorted_tuples[-1])) ): IndexError: list index out of range

afmcc commented 6 years ago

(relates to some odd data under 180607_D00390_0368_BCCJJVANXX/SQ0705)