AgResearch / gbs_prism

refactored GBS processing
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headers in generated code causes error messages #11

Closed afmcc closed 5 years ago

afmcc commented 5 years ago

as below (no effect on output )

iramohio-01$ cat /tmp/tmp.data_prismJ7EY5 Output format is unaligned. Field separator is " ". Showing only tuples. Default footer is off. /dataset/gseq_processing/active/bin/gbs_prism/updateFastqLocations.sh -s SQ0938 -k SQ0938 -r 190321_D00390_0443_ACD2WEANXX -f CDWEANXX -l 2 iramohio-01$

afmcc commented 5 years ago

fixed by commit 6360732f08b26a0ba37108c855e939d6feca62d7