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Issue tracker for Aidbox FHIR backend by Health Samurai
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[BUG] Error when trying to get a questionnaire in FHIR format #557

Open atuonufure opened 1 year ago

atuonufure commented 1 year ago

Describe the bug

When we try to get a questionnaire in FHIR format, an error occurs and the questionnaire remains in Aidbox format.

Request URL: http://localhost:8080/fhir/Questionnaire/new-appointment
Request Method: GET
Status Code: 500 Internal Server Error
Remote Address: [::1]:8080
Referrer Policy: strict-origin-when-cross-origin
Content-Length: 4323
Content-Type: application/json
Date: Wed, 29 Mar 2023 08:03:18 GMT
License-Mode: normal
Server: http-kit
X-Duration: 5
X-Request-Id: 7e4b7638-4a72-42e8-9fbc-d2005fd77d22
Provisional headers are shown
Learn more
accept: application/json
content-type: application/json
Referer: http://localhost:8080/ui/console
sec-ch-ua: "Google Chrome";v="111", "Not(A:Brand";v="8", "Chromium";v="111"
sec-ch-ua-mobile: ?0
sec-ch-ua-platform: "Linux"
User-Agent: Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/111.0.0.0 Safari/537.36

Severity

Critical.

Steps to reproduce the behavior:

  1. Prepare the following test data

  2. Make an API call http://localhost:8080/fhir/Questionnaire/new-appointment

  3. Receive the following errored response 

    {
"resourceType": "OperationOutcome",
"id": "exception",
"text": {
"status": "generated",
"div": "class clojure.lang.MapEntry cannot be cast to class clojure.lang.IPersistentMap (clojure.lang.MapEntry and clojure.lang.IPersistentMap are in unnamed module of loader 'app')"
},
"issue": [
{
  "severity": "fatal",
  "code": "exception",
  "diagnostics": "java.lang.ClassCastException: class clojure.lang.MapEntry cannot be cast to class clojure.lang.IPersistentMap (clojure.lang.MapEntry and clojure.lang.IPersistentMap are in unnamed module of loader 'app')\n at clojure.lang.RT.dissoc (RT.java:891)\n    clojure.core$dissoc.invokeStatic (core.clj:1526)\n    clojure.core$dissoc.invoke (core.clj:1519)\n    fhir.conv3$export_reference_value.invokeStatic (conv3.clj:88)\n    fhir.conv3$export_reference_value.invoke (conv3.clj:85)\n    fhir.conv3$export_extension$mk_ext__19523.invoke (conv3.clj:229)\n    clojure.core$mapv$fn__8535.invoke (core.clj:6979)\n    clojure.core.protocols$iter_reduce.invokeStatic (protocols.clj:49)\n    clojure.core.protocols$fn__8230.invokeStatic (protocols.clj:75)\n    clojure.core.protocols/fn (protocols.clj:75)\n    clojure.core.protocols$fn__8178$G__8173__8191.invoke (protocols.clj:13)\n    clojure.core$reduce.invokeStatic (core.clj:6886)\n    clojure.core$mapv.invokeStatic (core.clj:6970)\n    clojure.core$mapv.invoke (core.clj:6970)\n    fhir.conv3$export_extension.invokeStatic (conv3.clj:236)\n    fhir.conv3$export_extension.invoke (conv3.clj:209)\n    fhir.conv3$_STAR_export.invokeStatic (conv3.clj:509)\n    fhir.conv3$_STAR_export.invoke (conv3.clj:462)\n    fhir.conv3$export.invokeStatic (conv3.clj:586)\n    fhir.conv3$export.doInvoke (conv3.clj:582)\n    clojure.lang.RestFn.invoke (RestFn.java:442)\n    fhir.conv3$export_BANG_.invokeStatic (conv3.clj:832)\n    fhir.conv3$export_BANG_.invoke (conv3.clj:828)\n    fhir.core$fn__38040.invokeStatic (core.clj:224)\n    fhir.core/fn (core.clj:215)\n    clojure.lang.MultiFn.invoke (MultiFn.java:229)\n    unifn.core$_STAR_apply_impl$fn__9888.invoke (core.clj:44)\n    unifn.core$_STAR_apply_impl.invokeStatic (core.clj:44)\n    unifn.core$_STAR_apply_impl.invoke (core.clj:37)\n    unifn.core$_STAR_apply.invokeStatic (core.clj:71)\n    unifn.core$_STAR_apply.invoke (core.clj:68)\n    unifn.core$_STAR_apply.invokeStatic (core.clj:77)\n    unifn.core$_STAR_apply.invoke (core.clj:68)\n    fhir.core$transformator.invokeStatic (core.clj:239)\n    fhir.core$transformator.invoke (core.clj:239)\n    fhir.core$fn__38059.invokeStatic (core.clj:253)\n    fhir.core/fn (core.clj:253)\n    clojure.lang.MultiFn.invoke (MultiFn.java:229)\n    unifn.core$_STAR_apply_impl$fn__9888.invoke (core.clj:44)\n    unifn.core$_STAR_apply_impl.invokeStatic (core.clj:44)\n    unifn.core$_STAR_apply_impl.invoke (core.clj:37)\n    unifn.core$_STAR_apply.invokeStatic (core.clj:71)\n    unifn.core$_STAR_apply.invoke (core.clj:68)\n    proto.box$fn__46286.invokeStatic (box.clj:187)\n    proto.box/fn (box.clj:174)\n    clojure.lang.MultiFn.invoke (MultiFn.java:229)\n    unifn.core$_STAR_apply_impl$fn__9888.invoke (core.clj:44)\n    unifn.core$_STAR_apply_impl.invokeStatic (core.clj:44)\n    unifn.core$_STAR_apply_impl.invoke (core.clj:37)\n    unifn.core$_STAR_apply.invokeStatic (core.clj:71)\n    unifn.core$_STAR_apply.invoke (core.clj:68)\n    unifn.core$_STAR_apply.invokeStatic (core.clj:77)\n    unifn.core$_STAR_apply.invoke (core.clj:68)\n    proto.box$handle_to_ctx.invokeStatic (box.clj:331)\n    proto.box$handle_to_ctx.invoke (box.clj:271)\n    proto.box$start$fn__46501.doInvoke (box.clj:695)\n    clojure.lang.RestFn.invoke (RestFn.java:410)\n    web.core$mk_handler$fn__44448.invoke (core.clj:116)\n    web.core$healthcheck$fn__44436.invoke (core.clj:96)\n    ring.middleware.cookies$wrap_cookies$fn__44333.invoke (cookies.clj:214)\n    ring.middleware.content_type$wrap_content_type$fn__44163.invoke (content_type.clj:34)\n    ring.middleware.not_modified$wrap_not_modified$fn__44387.invoke (not_modified.clj:61)\n    org.httpkit.server.HttpHandler.run (RingHandler.java:123)\n    java.util.concurrent.Executors$RunnableAdapter.call (:-1)\n    java.util.concurrent.FutureTask.run (:-1)\n    java.util.concurrent.ThreadPoolExecutor.runWorker (:-1)\n    java.util.concurrent.ThreadPoolExecutor$Worker.run (:-1)\n    java.lang.Thread.run (:-1)\n"
}
]
}

Stacktrace:

devbox 07:33:28 w2 GET /fhir/Questionnaire/new-appointment
devbox 07:33:28 w2 policy devbox-policy
devbox 07:33:28 w1 POST /rpc?_format=transit&_m=aidbox.product/mixpanel-track-event
devbox 07:33:28 w7 POST /rpc?_format=transit&_m=aidbox.product/mixpanel-track-event
devbox 07:33:28 w7 policy devbox-policy
devbox 07:33:28 w1 policy devbox-policy
devbox 07:33:28 :info w1 [0ms] :rpc/call {:rpc_p {:type "Questionnaire.new"}, :rpc_m aidbox.product/mixpanel-track-event, :rpc_u {:email nil}, :op "rpc:mixpanel-track-event", :d 0, :ctx "23a328c0-fb31-4bb7-bcb9-4aa28f8fc8cf"}
devbox 07:33:28 :info w7 [0ms] :rpc/call {:rpc_p {:type "Questionnaire.view"}, :rpc_m aidbox.product/mixpanel-track-event, :rpc_u {:email nil}, :op "rpc:mixpanel-track-event", :d 0, :ctx "ed887984-d486-4b20-aa92-21916d3202ad"}
devbox 07:33:28 w1 [2ms] 200
devbox 07:33:28 w7 [2ms] 200
devbox 07:33:28 w2 [2ms] SELECT * FROM ((SELECT id, txid, ts, resource_type, status::text AS status, resource, cts FROM "questionnaire" as t WHERE (t.id = ?)) UNION (SELECT id, txid, ts, resource_type, status::text AS status, resource, cts FROM "questionnaire_history" as t WHERE (t.id = ? AND t.status = ?))) _ ORDER BY ts DESC LIMIT ? ["new-appointment" "new-appointment" "deleted" "1"]
devbox 07:33:28 :error w2 java.lang.ClassCastException: class clojure.lang.MapEntry cannot be cast to class clojure.lang.IPersistentMap (clojure.lang.MapEntry and clojure.lang.IPersistentMap are in unnamed module of loader 'app')
 at clojure.lang.RT.dissoc (RT.java:891)
    clojure.core$dissoc.invokeStatic (core.clj:1526)
    clojure.core$dissoc.invoke (core.clj:1519)
    fhir.conv3$export_reference_value.invokeStatic (conv3.clj:88)
    fhir.conv3$export_reference_value.invoke (conv3.clj:85)
    fhir.conv3$export_extension$mk_ext__19523.invoke (conv3.clj:229)
    clojure.core$mapv$fn__8535.invoke (core.clj:6979)
    clojure.core.protocols$iter_reduce.invokeStatic (protocols.clj:49)
    clojure.core.protocols$fn__8230.invokeStatic (protocols.clj:75)
    clojure.core.protocols/fn (protocols.clj:75)
    clojure.core.protocols$fn__8178$G__8173__8191.invoke (protocols.clj:13)
    clojure.core$reduce.invokeStatic (core.clj:6886)
    clojure.core$mapv.invokeStatic (core.clj:6970)
    clojure.core$mapv.invoke (core.clj:6970)
    fhir.conv3$export_extension.invokeStatic (conv3.clj:236)
    fhir.conv3$export_extension.invoke (conv3.clj:209)
    fhir.conv3$_STAR_export.invokeStatic (conv3.clj:509)
    fhir.conv3$_STAR_export.invoke (conv3.clj:462)
    fhir.conv3$export.invokeStatic (conv3.clj:586)
    fhir.conv3$export.doInvoke (conv3.clj:582)
    clojure.lang.RestFn.invoke (RestFn.java:442)
    fhir.conv3$export_BANG_.invokeStatic (conv3.clj:832)
    fhir.conv3$export_BANG_.invoke (conv3.clj:828)
    fhir.core$fn__38040.invokeStatic (core.clj:224)
    fhir.core/fn (core.clj:215)
    clojure.lang.MultiFn.invoke (MultiFn.java:229)
    unifn.core$_STAR_apply_impl$fn__9888.invoke (core.clj:44)
    unifn.core$_STAR_apply_impl.invokeStatic (core.clj:44)
    unifn.core$_STAR_apply_impl.invoke (core.clj:37)
    unifn.core$_STAR_apply.invokeStatic (core.clj:71)
    unifn.core$_STAR_apply.invoke (core.clj:68)
    unifn.core$_STAR_apply.invokeStatic (core.clj:77)
    unifn.core$_STAR_apply.invoke (core.clj:68)
    fhir.core$transformator.invokeStatic (core.clj:239)
    fhir.core$transformator.invoke (core.clj:239)
    fhir.core$fn__38059.invokeStatic (core.clj:253)
    fhir.core/fn (core.clj:253)
    clojure.lang.MultiFn.invoke (MultiFn.java:229)
    unifn.core$_STAR_apply_impl$fn__9888.invoke (core.clj:44)
    unifn.core$_STAR_apply_impl.invokeStatic (core.clj:44)
    unifn.core$_STAR_apply_impl.invoke (core.clj:37)
    unifn.core$_STAR_apply.invokeStatic (core.clj:71)
    unifn.core$_STAR_apply.invoke (core.clj:68)
    proto.box$fn__46286.invokeStatic (box.clj:187)
    proto.box/fn (box.clj:174)
    clojure.lang.MultiFn.invoke (MultiFn.java:229)
    unifn.core$_STAR_apply_impl$fn__9888.invoke (core.clj:44)
    unifn.core$_STAR_apply_impl.invokeStatic (core.clj:44)
    unifn.core$_STAR_apply_impl.invoke (core.clj:37)
    unifn.core$_STAR_apply.invokeStatic (core.clj:71)
    unifn.core$_STAR_apply.invoke (core.clj:68)
    unifn.core$_STAR_apply.invokeStatic (core.clj:77)
    unifn.core$_STAR_apply.invoke (core.clj:68)
    proto.box$handle_to_ctx.invokeStatic (box.clj:331)
    proto.box$handle_to_ctx.invoke (box.clj:271)
    proto.box$start$fn__46501.doInvoke (box.clj:695)
    clojure.lang.RestFn.invoke (RestFn.java:410)
    web.core$mk_handler$fn__44448.invoke (core.clj:116)
    web.core$healthcheck$fn__44436.invoke (core.clj:96)
    ring.middleware.cookies$wrap_cookies$fn__44333.invoke (cookies.clj:214)
    ring.middleware.content_type$wrap_content_type$fn__44163.invoke (content_type.clj:34)
    ring.middleware.not_modified$wrap_not_modified$fn__44387.invoke (not_modified.clj:61)
    org.httpkit.server.HttpHandler.run (RingHandler.java:123)
    java.util.concurrent.Executors$RunnableAdapter.call (:-1)
    java.util.concurrent.FutureTask.run (:-1)
    java.util.concurrent.ThreadPoolExecutor.runWorker (:-1)
    java.util.concurrent.ThreadPoolExecutor$Worker.run (:-1)
    java.lang.Thread.run (:-1)
 java.lang.ClassCastException: class clojure.lang.MapEntry cannot be cast to class clojure.lang.IPersistentMap (clojure.lang.MapEntry and clojure.lang.IPersistentMap are in unnamed module of loader 'app')
 at clojure.lang.RT.dissoc (RT.java:891)
    clojure.core$dissoc.invokeStatic (core.clj:1526)
    clojure.core$dissoc.invoke (core.clj:1519)
    fhir.conv3$export_reference_value.invokeStatic (conv3.clj:88)
    fhir.conv3$export_reference_value.invoke (conv3.clj:85)
    fhir.conv3$export_extension$mk_ext__19523.invoke (conv3.clj:229)
    clojure.core$mapv$fn__8535.invoke (core.clj:6979)
    clojure.core.protocols$iter_reduce.invokeStatic (protocols.clj:49)
    clojure.core.protocols$fn__8230.invokeStatic (protocols.clj:75)
    clojure.core.protocols/fn (protocols.clj:75)
    clojure.core.protocols$fn__8178$G__8173__8191.invoke (protocols.clj:13)
    clojure.core$reduce.invokeStatic (core.clj:6886)
    clojure.core$mapv.invokeStatic (core.clj:6970)
    clojure.core$mapv.invoke (core.clj:6970)
    fhir.conv3$export_extension.invokeStatic (conv3.clj:236)
    fhir.conv3$export_extension.invoke (conv3.clj:209)
    fhir.conv3$_STAR_export.invokeStatic (conv3.clj:509)
    fhir.conv3$_STAR_export.invoke (conv3.clj:462)
    fhir.conv3$export.invokeStatic (conv3.clj:586)
    fhir.conv3$export.doInvoke (conv3.clj:582)
    clojure.lang.RestFn.invoke (RestFn.java:442)
    fhir.conv3$export_BANG_.invokeStatic (conv3.clj:832)
    fhir.conv3$export_BANG_.invoke (conv3.clj:828)
    fhir.core$fn__38040.invokeStatic (core.clj:224)
    fhir.core/fn (core.clj:215)
    clojure.lang.MultiFn.invoke (MultiFn.java:229)
    unifn.core$_STAR_apply_impl$fn__9888.invoke (core.clj:44)
    unifn.core$_STAR_apply_impl.invokeStatic (core.clj:44)
    unifn.core$_STAR_apply_impl.invoke (core.clj:37)
    unifn.core$_STAR_apply.invokeStatic (core.clj:71)
    unifn.core$_STAR_apply.invoke (core.clj:68)
    unifn.core$_STAR_apply.invokeStatic (core.clj:77)
    unifn.core$_STAR_apply.invoke (core.clj:68)
    fhir.core$transformator.invokeStatic (core.clj:239)
    fhir.core$transformator.invoke (core.clj:239)
    fhir.core$fn__38059.invokeStatic (core.clj:253)
    fhir.core/fn (core.clj:253)
    clojure.lang.MultiFn.invoke (MultiFn.java:229)
    unifn.core$_STAR_apply_impl$fn__9888.invoke (core.clj:44)
    unifn.core$_STAR_apply_impl.invokeStatic (core.clj:44)
    unifn.core$_STAR_apply_impl.invoke (core.clj:37)
    unifn.core$_STAR_apply.invokeStatic (core.clj:71)
    unifn.core$_STAR_apply.invoke (core.clj:68)
    proto.box$fn__46286.invokeStatic (box.clj:187)
    proto.box/fn (box.clj:174)
    clojure.lang.MultiFn.invoke (MultiFn.java:229)
    unifn.core$_STAR_apply_impl$fn__9888.invoke (core.clj:44)
    unifn.core$_STAR_apply_impl.invokeStatic (core.clj:44)
    unifn.core$_STAR_apply_impl.invoke (core.clj:37)
    unifn.core$_STAR_apply.invokeStatic (core.clj:71)
    unifn.core$_STAR_apply.invoke (core.clj:68)
    unifn.core$_STAR_apply.invokeStatic (core.clj:77)
    unifn.core$_STAR_apply.invoke (core.clj:68)
    proto.box$handle_to_ctx.invokeStatic (box.clj:331)
    proto.box$handle_to_ctx.invoke (box.clj:271)
    proto.box$start$fn__46501.doInvoke (box.clj:695)
    clojure.lang.RestFn.invoke (RestFn.java:410)
    web.core$mk_handler$fn__44448.invoke (core.clj:116)
    web.core$healthcheck$fn__44436.invoke (core.clj:96)
    ring.middleware.cookies$wrap_cookies$fn__44333.invoke (cookies.clj:214)
    ring.middleware.content_type$wrap_content_type$fn__44163.invoke (content_type.clj:34)
    ring.middleware.not_modified$wrap_not_modified$fn__44387.invoke (not_modified.clj:61)
    org.httpkit.server.HttpHandler.run (RingHandler.java:123)
    java.util.concurrent.Executors$RunnableAdapter.call (:-1)
    java.util.concurrent.FutureTask.run (:-1)
    java.util.concurrent.ThreadPoolExecutor.runWorker (:-1)
    java.util.concurrent.ThreadPoolExecutor$Worker.run (:-1)
    java.lang.Thread.run (:-1)

devbox 07:33:28 w2 [6ms] 500
devbox 07:33:28 w3 POST /rpc?_format=transit&_m=aidbox.product/mixpanel-track-event
devbox 07:33:28 w3 policy devbox-policy
devbox 07:33:28 :info w3 [0ms] :rpc/call {:rpc_p {:type "Questionnaire.new"}, :rpc_m aidbox.product/mixpanel-track-event, :rpc_u {:email nil}, :op "rpc:mixpanel-track-event", :d 0, :ctx "a74e3f2f-4ff5-45bd-8a79-2f017d0a58b1"}
devbox 07:33:28 w3 [1ms] 200

Expected behavior

Get the questionnaire in FHIR format

Versions

Aidbox image:

atuonufure commented 1 year ago

All questionnaires that do not transform to FHIR format have a property that other questionnaires do not have - sourceQueries. If remove sourceQueries, converting to FHIR format works.