Closed kisudsoe closed 2 years ago
Hey, I can't seem to replicate the error which I believe might be due to the input file format I'm using - I just copied the sample data you have above into a txt file. Can you attach a small subset file that gives the same issue?
Hi Murphy, please find attached test.txt.gz. I checked this file gives the same issue. Thank you!
Hey,
I don't get any error when using version 1.5.6 (current master branch from Github). Could you try installing this latest version to see if the issue resolves for you too? This version will migrate to the Bioconductor master branch soon anyway.
Cheers, Alan.
Closing for now, re-open if the new version doesn't solve your issue.
Thanks, Alan.
Hello Alan,
I have the same issue even if I use the 1.5.12 version of MungeSumstats.
Hey, can you create a new issue with sample data and the message log on this just so it's easier to track?
Thanks, Alan.
Bug description
Hi developer,
I ran the format_sumstats for the regular plink2 result, but it yelled an error "Can't assign to the same column twice in the same query (duplicates detected)". I assume that the
data.table
function triggered the error.Hope to get any advice from you, thank you!
Console output
Here is my plink2 result header.
Session info
(Add output of the R function
utils::sessionInfo()
below. This helps us assess version/OS conflicts which could be causing bugs.)