Al-Murphy / MungeSumstats

Rapid standardisation and quality control of GWAS or QTL summary statistics
https://doi.org/doi:10.18129/B9.bioc.MungeSumstats
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Return sum stats as GRanges or VRanges #19

Closed bschilder closed 3 years ago

bschilder commented 3 years ago

Implemented using new functions to_GRanges and to_VRanges

bschilder commented 3 years ago

Implemented in new function convert_sumstats():

if(return_data){
    message("Returning data directly.")
    out <- convert_sumstats(sumstats_dt = sumstats_return$sumstats_dt, 
                            return_format = return_format)
    return(out)
  } else {
    message("Returning path to saved data.")
    return(check_save_out$save_path) # Returns address of modified file
  }