Al-Murphy / MungeSumstats

Rapid standardisation and quality control of GWAS or QTL summary statistics
https://doi.org/doi:10.18129/B9.bioc.MungeSumstats
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`import_sumstats`: Save each GWAS as a directory with respective log files #66

Closed bschilder closed 2 years ago

bschilder commented 2 years ago

Currently, if you run import_sumstats with the logging args turned on, the logs for each GWAS will all point to the same log folders with the same file names. This means each GWAS will essentially overwrite the log files of the previous.

To avoid this, we should automatically make a directory for each GWAS (named after its OpenGWAS id), with a subdirectory for its respective log files. This solves the log overwriting issue and organizes things nicely.

bschilder commented 2 years ago

Implemented in bschilder_dev