Currently, import_sumstats will download the VCF from OpenGWAS before moving onto the format_sumstats and realising that the munged sum stats already exist for that exact file name.
Would be nice to infer the outputting file name first, and only continue if it exists (or force_new=TRUE). Currently, only format_sumstats has this feature.
Currently,
import_sumstats
will download the VCF from OpenGWAS before moving onto theformat_sumstats
and realising that the munged sum stats already exist for that exact file name.Would be nice to infer the outputting file name first, and only continue if it exists (or
force_new=TRUE
). Currently, onlyformat_sumstats
has this feature.