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AlanRace / imzMLConverter

Tool for converting mass spectrometry data to the imzML format.
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combine multiple raw files to one imzML file. #13

Open Kumarsan201006 opened 1 year ago

Kumarsan201006 commented 1 year ago

Hi alan I am trying to combine multiple thermo .RAW file to make a single imzML file. But the imzML converter only convert the raw files to mzML.

I am, using the following code to convert

java -jar jimzMLConverter-2.1.1.jar imzML "filepath*raw"

and give the following message in log

C:\Users\Thermo\Downloads\jimzMLConverter-2.1.1>java -jar jimzMLConverter-2.1.1.jar imzML "C:\Users\Thermo\Downloads\jimzMLConverter-2.1.1\Rows*.raw" May 31, 2023 11:35:50 AM com.alanmrace.jimzmlconverter.MainCommand convert INFO: Converting file C:\Users\Thermo\Downloads\jimzMLConverter-2.1.1\Rows*.raw May 31, 2023 11:35:50 AM com.alanmrace.jimzmlconverter.MainCommand generatemzMLFiles INFO: Detected Thermo RAW file Checking for latest version of ProteoWizard in C:\Users\Thermo\AppData\Local\Apps "C:\Users\Thermo\AppData\Local\Apps\ProteoWizard 3.0.23146.4ef0614 64-bit\msconvert.exe" "C:\Users\Thermo\Downloads\jimzMLConverter-2.1.1\Rows*.raw" --zlib --simAsSpectra --srmAsSpectra -o "C:\Users\Thermo\Downloads\jimzMLConverter-2.1.1\Rows"

If I am using the wrong code to make an imzMl file, please suggest the written code. The image dimension should be x=320, y=300