the following messages I got
Traceback (most recent call last):
File "/home/moutusee/.local/bin/read_fast5_basecaller.py", line 479, in
sys.exit(main(opts, config_override))
File "/home/moutusee/.local/bin/read_fast5_basecaller.py", line 164, in main
initialise_aligner(config, opts.align_ref, opts.data_path, 'aligner') + \
File "/home/moutusee/.local/lib/python3.6/site-packages/albacore/aligner_utils.py", line 146, in initialise_aligner
raise FileNotFoundError('Could not find alignment reference {}.'.format(alignref))
FileNotFoundError: Could not find alignment reference /home/moutusee/.local/lib/python3.6/site-packages/albacore/data_versioned/rcoding.
haf
commented
5 years ago
gave the code read_fast5_basecaller.py -i /mmoutusee@moutusee-VirtualBox:~/Desktop/miniconda$ read_fast5_basecaller.py -i /media/sf_clinical_first_fast5_pass -f FLO-MIN106 -k SQK-LSK108 -o fastq -barcoding -t 4 -s /home/moutusee/Desktop/clinical_first_albacore -r
the following messages I got Traceback (most recent call last): File "/home/moutusee/.local/bin/read_fast5_basecaller.py", line 479, in
sys.exit(main(opts, config_override))
File "/home/moutusee/.local/bin/read_fast5_basecaller.py", line 164, in main
initialise_aligner(config, opts.align_ref, opts.data_path, 'aligner') + \
File "/home/moutusee/.local/lib/python3.6/site-packages/albacore/aligner_utils.py", line 146, in initialise_aligner
raise FileNotFoundError('Could not find alignment reference {}.'.format(alignref))
FileNotFoundError: Could not find alignment reference /home/moutusee/.local/lib/python3.6/site-packages/albacore/data_versioned/rcoding.