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AlessioMilanese / classify-genomes

Classify a genome sequence according to the mOTUs/specI taxonomy
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error in setup.py #1

Closed raw937 closed 5 years ago

raw937 commented 5 years ago

python setup.py

| SETUP CLASSIFY-GENOMES |

Download the compressed motus database (~1Gb) 954997496 [100.00%]

Check md5: MD5 verified Extract files from the archive...Error: failed to extract files

raw937 commented 5 years ago

ls -thor total 708M -rw-r----- 1 richard.white3 0 Jun 28 2017 mOTU.v2b.genes.len -rw-r----- 1 richard.white3 23M Jun 28 2017 mOTU.v2b.padded.coords -rw-r----- 1 richard.white3 0 Aug 20 2017 mOTU.v2b.nr.padded.ann -rw-r----- 1 richard.white3 13K Aug 20 2017 mOTU.v2b.nr.padded.amb -rw-r----- 1 richard.white3 618M Aug 20 2017 mOTU.v2b.nr.padded -rw-r----- 1 richard.white3 0 Aug 20 2017 mOTU.v2b.nr.padded.bwt -rw-r----- 1 richard.white3 0 Aug 20 2017 mOTU.v2b.nr.padded.pac -rw-r----- 1 richard.white3 0 Aug 20 2017 mOTU.v2b.nr.padded.sa -rw-r----- 1 richard.white3 13M Nov 1 2017 bam_header_nr -rw-r----- 1 richard.white3 158M Feb 19 2018 mOTU.v2b.centroids.reformatted.padded -rw-r----- 1 richard.white3 0 Feb 19 2018 mOTU.v2b.centroids.reformatted.padded.bwt -rw-r----- 1 richard.white3 0 Feb 19 2018 mOTU.v2b.centroids.reformatted.padded.pac -rw-r----- 1 richard.white3 0 Feb 19 2018 mOTU.v2b.centroids.reformatted.padded.ann -rw-r----- 1 richard.white3 4.3K Feb 19 2018 mOTU.v2b.centroids.reformatted.padded.amb -rw-r----- 1 richard.white3 0 Feb 19 2018 mOTU.v2b.centroids.reformatted.padded.sa -rw-r----- 1 richard.white3 0 Feb 19 2018 bam_header_cen -rw-r----- 1 richard.white3 0 Feb 19 2018 mOTU.v2b.padded.coords_for_centroids -rw-r----- 1 richard.white3 0 Mar 15 2018 mOTU-LG.map.line.tsv -rw-r----- 1 richard.white3 3.5M Mar 15 2018 mOTU-LG.map.tsv -rw-r----- 1 richard.white3 0 Mar 15 2018 mOTU.v2b.map -rw-r----- 1 richard.white3 953K Mar 15 2018 prok-refdb-v11.0.0_specI-v2_taxonomy_v1.map -rw-r----- 1 richard.white3 416K Mar 15 2018 mOTULG.taxonomy -rw-r----- 1 richard.white3 13M Apr 23 2018 mOTU.v2b.centroids.reformatted.padded.annotations -rw-r----- 1 richard.white3 415K Jun 10 2018 short_names.txt drwxr-x--- 2 richard.white3 4.0K Jun 10 2018 test -rw-r----- 1 richard.white3 4.5M Aug 23 2018 CAMI_Sep_2015_mOTUs_2.0.0.tsv

raw937 commented 5 years ago

tar -zxvf db_mOTU.tar.gz db_mOTU/ db_mOTU/mOTU-LG.map.tsv db_mOTU/mOTULG.taxonomy db_mOTU/CAMI_Sep_2015_mOTUs_2.0.0.tsv db_mOTU/mOTU.v2b.centroids.reformatted.padded.annotations db_mOTU/short_names.txt db_mOTU/bam_header_nr db_mOTU/mOTU.v2b.padded.coords db_mOTU/mOTU.v2b.centroids.reformatted.padded db_mOTU/mOTU.v2b.centroids.reformatted.padded.amb db_mOTU/prok-refdb-v11.0.0_specI-v2_taxonomy_v1.map db_mOTU/mOTU.v2b.nr.padded.amb db_mOTU/mOTU.v2b.nr.padded tar: db_mOTU/mOTU.v2b.nr.padded: Cannot close: Disk quota exceeded db_mOTU/bam_header_cen tar: db_mOTU/bam_header_cen: Cannot close: Disk quota exceeded db_mOTU/mOTU.v2b.nr.padded.sa tar: db_mOTU/mOTU.v2b.nr.padded.sa: Cannot close: Disk quota exceeded db_mOTU/mOTU.v2b.centroids.reformatted.padded.pac tar: db_mOTU/mOTU.v2b.centroids.reformatted.padded.pac: Cannot close: Disk quota exceeded db_mOTU/mOTU.v2b.centroids.reformatted.padded.ann tar: db_mOTU/mOTU.v2b.centroids.reformatted.padded.ann: Cannot close: Disk quota exceeded db_mOTU/mOTU.v2b.nr.padded.ann tar: db_mOTU/mOTU.v2b.nr.padded.ann: Cannot close: Disk quota exceeded db_mOTU/test/ db_mOTU/test/test2_for.fastq tar: db_mOTU/test/test2_for.fastq: Cannot close: Disk quota exceeded db_mOTU/test/test2.motus tar: db_mOTU/test/test2.motus: Cannot close: Disk quota exceeded db_mOTU/test/test1_single.fastq tar: db_mOTU/test/test1_single.fastq: Cannot close: Disk quota exceeded db_mOTU/test/test2_rev.fastq tar: db_mOTU/test/test2_rev.fastq: Cannot close: Disk quota exceeded db_mOTU/test/test1.motus tar: db_mOTU/test/test1.motus: Cannot close: Disk quota exceeded db_mOTU/mOTU-LG.map.line.tsv tar: db_mOTU/mOTU-LG.map.line.tsv: Cannot close: Disk quota exceeded db_mOTU/mOTU.v2b.centroids.reformatted.padded.sa tar: db_mOTU/mOTU.v2b.centroids.reformatted.padded.sa: Cannot close: Disk quota exceeded db_mOTU/mOTU.v2b.nr.padded.pac tar: db_mOTU/mOTU.v2b.nr.padded.pac: Cannot close: Disk quota exceeded db_mOTU/mOTU.v2b.nr.padded.bwt tar: db_mOTU/mOTU.v2b.nr.padded.bwt: Cannot close: Disk quota exceeded db_mOTU/mOTU.v2b.genes.len tar: db_mOTU/mOTU.v2b.genes.len: Cannot close: Disk quota exceeded db_mOTU/mOTU.v2b.centroids.reformatted.padded.bwt tar: db_mOTU/mOTU.v2b.centroids.reformatted.padded.bwt: Cannot close: Disk quota exceeded db_mOTU/mOTU.v2b.padded.coords_for_centroids tar: db_mOTU/mOTU.v2b.padded.coords_for_centroids: Cannot close: Disk quota exceeded db_mOTU/mOTU.v2b.map tar: db_mOTU/mOTU.v2b.map: Cannot close: Disk quota exceeded tar: Exiting with failure status due to previous errors

AlessioMilanese commented 5 years ago

try to install in a different path, where you have some space left.

raw937 commented 5 years ago

it appears that I have enough space on that drive. I am testing an install in another location. Well, that worked. Thanks!

AlessioMilanese commented 5 years ago

I'm glad it worked! I'm closing the issue. All the best, alessio