Results in final_ps_map.csv or BLAST_PS_tables.tbz

AlexGa / Phylostratigraphy

Pipeline for Phylostratigraphy

Apache License 2.0

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Results in final_ps_map.csv or BLAST_PS_tables.tbz #7

Open wzcc-hub opened 1 week ago

wzcc-hub commented 1 week ago

Hi Alex, Thanks for your excellent tool. I'm performing comparative genomics analysis, and using single-copy orthologous genes from the target species to do phylostratigraphic analysis. But I have some confusion about the result file. I ended up with a final_ps_map.csv file and BLAST_PS_tables.tbz, but the csv file results have only a few PS(about 5)in all species, while the tbz has more PS results. So, I would like to ask which result I should refer to? Looking forward to your reply! csv tbz

wzcc-hub commented 1 week ago

And I used phyloBlastDB.fa database in the sequence similarity searches, the results just has PS1 and PS2. But when I manually select some species as database, some other PS appeared.I am also confused about this situation. Looking forward to your reply!