AlexKnyshov / alibaseq

Alignment-Based Sequence extraction
MIT License
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Any suggestions for screening the most useful loci? #7

Open sanvva opened 1 year ago

sanvva commented 1 year ago

Hi, everyone. I need some help. After recovering thousands of target genes, how to screen the most valuable loci which could reconstruct the same phylogenetic tree as the species tree constructed by coalescent method? I've tried number or percentage of parsimony-informative sites, gene length, but the longest or most variable genes are not my goal. Any suggestions?