AlexTISYoung / snipar

Imputation of parental genotypes, inference of sibling IBD segments, family based GWAS, and polygenic score analyses.
MIT License
24 stars 5 forks source link

Installing on M1 Macbook Pro #17

Closed michaelbennett99 closed 1 year ago

michaelbennett99 commented 2 years ago

When trying to install SNIPAR on a macbook pro with an M1 chip, I get the following error for both python 3.8 and 3.9 (it is more complicated to install python 3.7 and older on an M1 mac).

(env) mbp % pip install snipar
ERROR: Could not find a version that satisfies the requirement snipar (from versions: none)
ERROR: No matching distribution found for snipar
michaelbennett99 commented 2 years ago

When trying to build from source, we get the following error.

Processing /Users/michaelbennett/software/snipar
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Installing backend dependencies ... done
  Preparing metadata (pyproject.toml) ... done
Collecting numba==0.55.0
  Downloading numba-0.55.0.tar.gz (2.3 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.3/2.3 MB 8.6 MB/s eta 0:00:00
  Preparing metadata (setup.py) ... done
Collecting numpy==1.21.1
  Using cached numpy-1.21.1-cp39-cp39-macosx_11_0_arm64.whl (12.4 MB)
Collecting scipy==1.7.1
  Downloading scipy-1.7.1.tar.gz (36.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 36.1/36.1 MB 11.4 MB/s eta 0:00:00
  Installing build dependencies ... error
  error: subprocess-exited-with-error

  × pip subprocess to install build dependencies did not run successfully.
  │ exit code: 1
  ╰─> [669 lines of output]
      Ignoring numpy: markers 'python_version == "3.7" and platform_machine == "aarch64"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.8" and platform_machine == "aarch64"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.7" and platform_machine != "aarch64" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.8" and platform_machine != "aarch64" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.7" and platform_python_implementation == "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.8" and platform_python_implementation == "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.9" and platform_python_implementation == "PyPy"' don't match your environment
      Collecting wheel<0.37.0
        Downloading wheel-0.36.2-py2.py3-none-any.whl (35 kB)
      Collecting setuptools<58.0.0
        Downloading setuptools-57.5.0-py3-none-any.whl (819 kB)
           ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 819.3/819.3 KB 8.3 MB/s eta 0:00:00
      Collecting Cython<3.0,>=0.29.18
        Using cached Cython-0.29.28-py2.py3-none-any.whl (983 kB)
      Collecting pybind11<2.7.0,>=2.4.3
        Downloading pybind11-2.6.2-py2.py3-none-any.whl (191 kB)
           ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 191.4/191.4 KB 5.3 MB/s eta 0:00:00
      Collecting pythran==0.9.11
        Downloading pythran-0.9.11-py3-none-any.whl (4.2 MB)
           ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.2/4.2 MB 10.2 MB/s eta 0:00:00
      Collecting numpy==1.19.3
        Downloading numpy-1.19.3.zip (7.3 MB)
           ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.3/7.3 MB 10.2 MB/s eta 0:00:00
        Installing build dependencies: started
        Installing build dependencies: finished with status 'done'
        Getting requirements to build wheel: started
        Getting requirements to build wheel: finished with status 'done'
        Preparing metadata (pyproject.toml): started
        Preparing metadata (pyproject.toml): finished with status 'done'
      Collecting decorator
        Downloading decorator-5.1.1-py3-none-any.whl (9.1 kB)
      Collecting six
        Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
      Collecting beniget~=0.3.0
        Downloading beniget-0.3.0-py3-none-any.whl (9.3 kB)
      Collecting networkx>=2
        Downloading networkx-2.8-py3-none-any.whl (2.0 MB)
           ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 7.4 MB/s eta 0:00:00
      Collecting gast~=0.4.0
        Downloading gast-0.4.0-py3-none-any.whl (9.8 kB)
      Collecting ply>=3.4
        Downloading ply-3.11-py2.py3-none-any.whl (49 kB)
           ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 49.6/49.6 KB 1.5 MB/s eta 0:00:00
      Building wheels for collected packages: numpy
        Building wheel for numpy (pyproject.toml): started
        Building wheel for numpy (pyproject.toml): finished with status 'error'
        error: subprocess-exited-with-error

        × Building wheel for numpy (pyproject.toml) did not run successfully.
        │ exit code: 1
        ╰─> [612 lines of output]
            Running from numpy source directory.
            numpy/random/_bounded_integers.pxd.in has not changed
            numpy/random/_philox.pyx has not changed
            numpy/random/_bounded_integers.pyx.in has not changed
            numpy/random/_sfc64.pyx has not changed
            numpy/random/_mt19937.pyx has not changed
            numpy/random/bit_generator.pyx has not changed
            Processing numpy/random/_bounded_integers.pyx
            numpy/random/mtrand.pyx has not changed
            numpy/random/_generator.pyx has not changed
            numpy/random/_pcg64.pyx has not changed
            numpy/random/_common.pyx has not changed
            Cythonizing sources
            blas_opt_info:
            blas_mkl_info:
            customize UnixCCompiler
              libraries mkl_rt not found in ['/Users/michaelbennett/miniconda3/envs/snipar_test/lib', '/usr/local/lib', '/usr/lib']
              NOT AVAILABLE

            blis_info:
              libraries blis not found in ['/Users/michaelbennett/miniconda3/envs/snipar_test/lib', '/usr/local/lib', '/usr/lib']
              NOT AVAILABLE

            openblas_info:
              libraries openblas not found in ['/Users/michaelbennett/miniconda3/envs/snipar_test/lib', '/usr/local/lib', '/usr/lib']
              NOT AVAILABLE

            atlas_3_10_blas_threads_info:
            Setting PTATLAS=ATLAS
              libraries tatlas not found in ['/Users/michaelbennett/miniconda3/envs/snipar_test/lib', '/usr/local/lib', '/usr/lib']
              NOT AVAILABLE

            atlas_3_10_blas_info:
              libraries satlas not found in ['/Users/michaelbennett/miniconda3/envs/snipar_test/lib', '/usr/local/lib', '/usr/lib']
              NOT AVAILABLE

            atlas_blas_threads_info:
            Setting PTATLAS=ATLAS
              libraries ptf77blas,ptcblas,atlas not found in ['/Users/michaelbennett/miniconda3/envs/snipar_test/lib', '/usr/local/lib', '/usr/lib']
              NOT AVAILABLE

            atlas_blas_info:
              libraries f77blas,cblas,atlas not found in ['/Users/michaelbennett/miniconda3/envs/snipar_test/lib', '/usr/local/lib', '/usr/lib']
              NOT AVAILABLE

            accelerate_info:
              libraries accelerate not found in ['/Users/michaelbennett/miniconda3/envs/snipar_test/lib', '/usr/local/lib', '/usr/lib']
            Library accelerate was not found. Ignoring
              libraries veclib not found in ['/Users/michaelbennett/miniconda3/envs/snipar_test/lib', '/usr/local/lib', '/usr/lib']
            Library veclib was not found. Ignoring
              FOUND:
                extra_compile_args = ['-faltivec', '-I/System/Library/Frameworks/vecLib.framework/Headers']
                extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
                define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]

              FOUND:
                extra_compile_args = ['-faltivec', '-I/System/Library/Frameworks/vecLib.framework/Headers']
                extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
                define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]

            non-existing path in 'numpy/distutils': 'site.cfg'
            lapack_opt_info:
            lapack_mkl_info:
              libraries mkl_rt not found in ['/Users/michaelbennett/miniconda3/envs/snipar_test/lib', '/usr/local/lib', '/usr/lib']
              NOT AVAILABLE

            openblas_lapack_info:
              libraries openblas not found in ['/Users/michaelbennett/miniconda3/envs/snipar_test/lib', '/usr/local/lib', '/usr/lib']
              NOT AVAILABLE

            openblas_clapack_info:
              libraries openblas,lapack not found in ['/Users/michaelbennett/miniconda3/envs/snipar_test/lib', '/usr/local/lib', '/usr/lib']
              NOT AVAILABLE

            flame_info:
              libraries flame not found in ['/Users/michaelbennett/miniconda3/envs/snipar_test/lib', '/usr/local/lib', '/usr/lib']
              NOT AVAILABLE

            atlas_3_10_threads_info:
            Setting PTATLAS=ATLAS
              libraries lapack_atlas not found in /Users/michaelbennett/miniconda3/envs/snipar_test/lib
              libraries tatlas,tatlas not found in /Users/michaelbennett/miniconda3/envs/snipar_test/lib
              libraries lapack_atlas not found in /usr/local/lib
              libraries tatlas,tatlas not found in /usr/local/lib
              libraries lapack_atlas not found in /usr/lib
              libraries tatlas,tatlas not found in /usr/lib
            <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
              NOT AVAILABLE

            atlas_3_10_info:
              libraries lapack_atlas not found in /Users/michaelbennett/miniconda3/envs/snipar_test/lib
              libraries satlas,satlas not found in /Users/michaelbennett/miniconda3/envs/snipar_test/lib
              libraries lapack_atlas not found in /usr/local/lib
              libraries satlas,satlas not found in /usr/local/lib
              libraries lapack_atlas not found in /usr/lib
              libraries satlas,satlas not found in /usr/lib
            <class 'numpy.distutils.system_info.atlas_3_10_info'>
              NOT AVAILABLE

            atlas_threads_info:
            Setting PTATLAS=ATLAS
              libraries lapack_atlas not found in /Users/michaelbennett/miniconda3/envs/snipar_test/lib
              libraries ptf77blas,ptcblas,atlas not found in /Users/michaelbennett/miniconda3/envs/snipar_test/lib
              libraries lapack_atlas not found in /usr/local/lib
              libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
              libraries lapack_atlas not found in /usr/lib
              libraries ptf77blas,ptcblas,atlas not found in /usr/lib
            <class 'numpy.distutils.system_info.atlas_threads_info'>
              NOT AVAILABLE

            atlas_info:
              libraries lapack_atlas not found in /Users/michaelbennett/miniconda3/envs/snipar_test/lib
              libraries f77blas,cblas,atlas not found in /Users/michaelbennett/miniconda3/envs/snipar_test/lib
              libraries lapack_atlas not found in /usr/local/lib
              libraries f77blas,cblas,atlas not found in /usr/local/lib
              libraries lapack_atlas not found in /usr/lib
              libraries f77blas,cblas,atlas not found in /usr/lib
            <class 'numpy.distutils.system_info.atlas_info'>
              NOT AVAILABLE

              FOUND:
                extra_compile_args = ['-faltivec', '-I/System/Library/Frameworks/vecLib.framework/Headers']
                extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
                define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]

            /private/var/folders/k3/fk517tds1m9bs2cw5x9l95540000gn/T/pip-build-env-cwxvkbjg/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py:275: UserWarning: Unknown distribution option: 'define_macros'
              warnings.warn(msg)
            running bdist_wheel
            running build
            running config_cc
            unifing config_cc, config, build_clib, build_ext, build commands --compiler options
            running config_fc
            unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
            running build_src
            build_src
            building py_modules sources
            building library "npymath" sources
            Could not locate executable gfortran
            Could not locate executable f95
            Could not locate executable f90
            Could not locate executable f77
            Could not locate executable xlf90
            Could not locate executable xlf
            Could not locate executable ifort
            Could not locate executable ifc
            Could not locate executable g77
            Could not locate executable g95
            Could not locate executable pgfortran
            don't know how to compile Fortran code on platform 'posix'
              adding 'build/src.macosx-11.1-arm64-3.9/numpy/core/src/npymath' to include_dirs.
            None - nothing done with h_files = ['build/src.macosx-11.1-arm64-3.9/numpy/core/src/npymath/npy_math_internal.h']
            building library "npysort" sources
              adding 'build/src.macosx-11.1-arm64-3.9/numpy/core/src/common' to include_dirs.
            None - nothing done with h_files = ['build/src.macosx-11.1-arm64-3.9/numpy/core/src/common/npy_sort.h', 'build/src.macosx-11.1-arm64-3.9/numpy/core/src/common/npy_partition.h', 'build/src.macosx-11.1-arm64-3.9/numpy/core/src/common/npy_binsearch.h']
            building library "npyrandom" sources
            building extension "numpy.core._multiarray_tests" sources
            building extension "numpy.core._multiarray_umath" sources
              adding 'build/src.macosx-11.1-arm64-3.9/numpy/core/src/umath' to include_dirs.
              adding 'build/src.macosx-11.1-arm64-3.9/numpy/core/src/npymath' to include_dirs.
              adding 'build/src.macosx-11.1-arm64-3.9/numpy/core/src/common' to include_dirs.
            numpy.core - nothing done with h_files = ['build/src.macosx-11.1-arm64-3.9/numpy/core/src/umath/funcs.inc', 'build/src.macosx-11.1-arm64-3.9/numpy/core/src/umath/simd.inc', 'build/src.macosx-11.1-arm64-3.9/numpy/core/src/umath/loops.h', 'build/src.macosx-11.1-arm64-3.9/numpy/core/src/umath/matmul.h', 'build/src.macosx-11.1-arm64-3.9/numpy/core/src/umath/clip.h', 'build/src.macosx-11.1-arm64-3.9/numpy/core/src/npymath/npy_math_internal.h', 'build/src.macosx-11.1-arm64-3.9/numpy/core/src/common/templ_common.h', 'build/src.macosx-11.1-arm64-3.9/numpy/core/include/numpy/config.h', 'build/src.macosx-11.1-arm64-3.9/numpy/core/include/numpy/_numpyconfig.h', 'build/src.macosx-11.1-arm64-3.9/numpy/core/include/numpy/__multiarray_api.h', 'build/src.macosx-11.1-arm64-3.9/numpy/core/include/numpy/__ufunc_api.h']
            building extension "numpy.core._umath_tests" sources
            building extension "numpy.core._rational_tests" sources
            building extension "numpy.core._struct_ufunc_tests" sources
            building extension "numpy.core._operand_flag_tests" sources
            building extension "numpy.fft._pocketfft_internal" sources
            building extension "numpy.linalg.lapack_lite" sources
            building extension "numpy.linalg._umath_linalg" sources
            building extension "numpy.random._mt19937" sources
            building extension "numpy.random._philox" sources
            building extension "numpy.random._pcg64" sources
            building extension "numpy.random._sfc64" sources
            building extension "numpy.random._common" sources
            building extension "numpy.random.bit_generator" sources
            building extension "numpy.random._generator" sources
            building extension "numpy.random._bounded_integers" sources
            building extension "numpy.random.mtrand" sources
            building data_files sources
            build_src: building npy-pkg config files
            running build_py
            creating build/lib.macosx-11.1-arm64-3.9
            creating build/lib.macosx-11.1-arm64-3.9/numpy
            copying numpy/conftest.py -> build/lib.macosx-11.1-arm64-3.9/numpy
            copying numpy/version.py -> build/lib.macosx-11.1-arm64-3.9/numpy
            copying numpy/_globals.py -> build/lib.macosx-11.1-arm64-3.9/numpy
            copying numpy/__init__.py -> build/lib.macosx-11.1-arm64-3.9/numpy
            copying numpy/dual.py -> build/lib.macosx-11.1-arm64-3.9/numpy
            copying numpy/_distributor_init.py -> build/lib.macosx-11.1-arm64-3.9/numpy
            copying numpy/setup.py -> build/lib.macosx-11.1-arm64-3.9/numpy
            copying numpy/ctypeslib.py -> build/lib.macosx-11.1-arm64-3.9/numpy
            copying numpy/matlib.py -> build/lib.macosx-11.1-arm64-3.9/numpy
            copying numpy/_pytesttester.py -> build/lib.macosx-11.1-arm64-3.9/numpy
            copying build/src.macosx-11.1-arm64-3.9/numpy/__config__.py -> build/lib.macosx-11.1-arm64-3.9/numpy
            creating build/lib.macosx-11.1-arm64-3.9/numpy/compat
            copying numpy/compat/py3k.py -> build/lib.macosx-11.1-arm64-3.9/numpy/compat
            copying numpy/compat/__init__.py -> build/lib.macosx-11.1-arm64-3.9/numpy/compat
            copying numpy/compat/setup.py -> build/lib.macosx-11.1-arm64-3.9/numpy/compat
            copying numpy/compat/_inspect.py -> build/lib.macosx-11.1-arm64-3.9/numpy/compat
            creating build/lib.macosx-11.1-arm64-3.9/numpy/compat/tests
            copying numpy/compat/tests/__init__.py -> build/lib.macosx-11.1-arm64-3.9/numpy/compat/tests
            copying numpy/compat/tests/test_compat.py -> build/lib.macosx-11.1-arm64-3.9/numpy/compat/tests
            creating build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/umath.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/fromnumeric.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/_dtype.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/_add_newdocs.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/_methods.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/_internal.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/_string_helpers.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/multiarray.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/_asarray.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/records.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/__init__.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/setup_common.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/memmap.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/overrides.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/getlimits.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/_dtype_ctypes.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/defchararray.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/shape_base.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/machar.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/setup.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/numeric.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/function_base.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/einsumfunc.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/umath_tests.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/_ufunc_config.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/_exceptions.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/numerictypes.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/_type_aliases.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/cversions.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/arrayprint.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            copying numpy/core/code_generators/generate_numpy_api.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core
            creating build/lib.macosx-11.1-arm64-3.9/numpy/core/tests
            copying numpy/core/tests/test_numerictypes.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core/tests
            copying numpy/core/tests/test_scalar_methods.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core/tests
            copying numpy/core/tests/test_scalarmath.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core/tests
            copying numpy/core/tests/test_item_selection.py -> build/lib.macosx-11.1-arm64-3.9/numpy/core/tests
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            copying numpy/lib/twodim_base.py -> build/lib.macosx-11.1-arm64-3.9/numpy/lib
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            copying numpy/linalg/setup.py -> build/lib.macosx-11.1-arm64-3.9/numpy/linalg
            copying numpy/linalg/linalg.py -> build/lib.macosx-11.1-arm64-3.9/numpy/linalg
            creating build/lib.macosx-11.1-arm64-3.9/numpy/linalg/tests
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            creating build/lib.macosx-11.1-arm64-3.9/numpy/ma
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            copying numpy/ma/testutils.py -> build/lib.macosx-11.1-arm64-3.9/numpy/ma
            copying numpy/ma/__init__.py -> build/lib.macosx-11.1-arm64-3.9/numpy/ma
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            copying numpy/ma/bench.py -> build/lib.macosx-11.1-arm64-3.9/numpy/ma
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            copying numpy/ma/timer_comparison.py -> build/lib.macosx-11.1-arm64-3.9/numpy/ma
            copying numpy/ma/mrecords.py -> build/lib.macosx-11.1-arm64-3.9/numpy/ma
            creating build/lib.macosx-11.1-arm64-3.9/numpy/ma/tests
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            copying numpy/ma/tests/test_mrecords.py -> build/lib.macosx-11.1-arm64-3.9/numpy/ma/tests
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            creating build/lib.macosx-11.1-arm64-3.9/numpy/matrixlib
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            copying numpy/matrixlib/defmatrix.py -> build/lib.macosx-11.1-arm64-3.9/numpy/matrixlib
            creating build/lib.macosx-11.1-arm64-3.9/numpy/matrixlib/tests
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            copying numpy/matrixlib/tests/test_defmatrix.py -> build/lib.macosx-11.1-arm64-3.9/numpy/matrixlib/tests
            copying numpy/matrixlib/tests/__init__.py -> build/lib.macosx-11.1-arm64-3.9/numpy/matrixlib/tests
            copying numpy/matrixlib/tests/test_interaction.py -> build/lib.macosx-11.1-arm64-3.9/numpy/matrixlib/tests
            copying numpy/matrixlib/tests/test_numeric.py -> build/lib.macosx-11.1-arm64-3.9/numpy/matrixlib/tests
            copying numpy/matrixlib/tests/test_masked_matrix.py -> build/lib.macosx-11.1-arm64-3.9/numpy/matrixlib/tests
            copying numpy/matrixlib/tests/test_multiarray.py -> build/lib.macosx-11.1-arm64-3.9/numpy/matrixlib/tests
            copying numpy/matrixlib/tests/test_regression.py -> build/lib.macosx-11.1-arm64-3.9/numpy/matrixlib/tests
            creating build/lib.macosx-11.1-arm64-3.9/numpy/polynomial
            copying numpy/polynomial/laguerre.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial
            copying numpy/polynomial/_polybase.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial
            copying numpy/polynomial/polyutils.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial
            copying numpy/polynomial/__init__.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial
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            copying numpy/polynomial/hermite_e.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial
            copying numpy/polynomial/chebyshev.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial
            copying numpy/polynomial/polynomial.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial
            copying numpy/polynomial/legendre.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial
            copying numpy/polynomial/hermite.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial
            creating build/lib.macosx-11.1-arm64-3.9/numpy/polynomial/tests
            copying numpy/polynomial/tests/test_chebyshev.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial/tests
            copying numpy/polynomial/tests/test_hermite_e.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial/tests
            copying numpy/polynomial/tests/test_polynomial.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial/tests
            copying numpy/polynomial/tests/__init__.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial/tests
            copying numpy/polynomial/tests/test_laguerre.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial/tests
            copying numpy/polynomial/tests/test_legendre.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial/tests
            copying numpy/polynomial/tests/test_printing.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial/tests
            copying numpy/polynomial/tests/test_hermite.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial/tests
            copying numpy/polynomial/tests/test_classes.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial/tests
            copying numpy/polynomial/tests/test_polyutils.py -> build/lib.macosx-11.1-arm64-3.9/numpy/polynomial/tests
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            copying numpy/random/setup.py -> build/lib.macosx-11.1-arm64-3.9/numpy/random
            creating build/lib.macosx-11.1-arm64-3.9/numpy/random/tests
            copying numpy/random/tests/test_generator_mt19937.py -> build/lib.macosx-11.1-arm64-3.9/numpy/random/tests
            copying numpy/random/tests/test_randomstate.py -> build/lib.macosx-11.1-arm64-3.9/numpy/random/tests
            copying numpy/random/tests/test_direct.py -> build/lib.macosx-11.1-arm64-3.9/numpy/random/tests
            copying numpy/random/tests/test_extending.py -> build/lib.macosx-11.1-arm64-3.9/numpy/random/tests
            copying numpy/random/tests/__init__.py -> build/lib.macosx-11.1-arm64-3.9/numpy/random/tests
            copying numpy/random/tests/test_smoke.py -> build/lib.macosx-11.1-arm64-3.9/numpy/random/tests
            copying numpy/random/tests/test_randomstate_regression.py -> build/lib.macosx-11.1-arm64-3.9/numpy/random/tests
            copying numpy/random/tests/test_seed_sequence.py -> build/lib.macosx-11.1-arm64-3.9/numpy/random/tests
            copying numpy/random/tests/test_generator_mt19937_regressions.py -> build/lib.macosx-11.1-arm64-3.9/numpy/random/tests
            copying numpy/random/tests/test_random.py -> build/lib.macosx-11.1-arm64-3.9/numpy/random/tests
            copying numpy/random/tests/test_regression.py -> build/lib.macosx-11.1-arm64-3.9/numpy/random/tests
            creating build/lib.macosx-11.1-arm64-3.9/numpy/testing
            copying numpy/testing/__init__.py -> build/lib.macosx-11.1-arm64-3.9/numpy/testing
            copying numpy/testing/setup.py -> build/lib.macosx-11.1-arm64-3.9/numpy/testing
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            copying numpy/testing/print_coercion_tables.py -> build/lib.macosx-11.1-arm64-3.9/numpy/testing
            creating build/lib.macosx-11.1-arm64-3.9/numpy/testing/_private
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            copying numpy/testing/_private/noseclasses.py -> build/lib.macosx-11.1-arm64-3.9/numpy/testing/_private
            copying numpy/testing/_private/utils.py -> build/lib.macosx-11.1-arm64-3.9/numpy/testing/_private
            copying numpy/testing/_private/parameterized.py -> build/lib.macosx-11.1-arm64-3.9/numpy/testing/_private
            copying numpy/testing/_private/decorators.py -> build/lib.macosx-11.1-arm64-3.9/numpy/testing/_private
            creating build/lib.macosx-11.1-arm64-3.9/numpy/testing/tests
            copying numpy/testing/tests/test_utils.py -> build/lib.macosx-11.1-arm64-3.9/numpy/testing/tests
            copying numpy/testing/tests/test_decorators.py -> build/lib.macosx-11.1-arm64-3.9/numpy/testing/tests
            copying numpy/testing/tests/__init__.py -> build/lib.macosx-11.1-arm64-3.9/numpy/testing/tests
            copying numpy/testing/tests/test_doctesting.py -> build/lib.macosx-11.1-arm64-3.9/numpy/testing/tests
            creating build/lib.macosx-11.1-arm64-3.9/numpy/tests
            copying numpy/tests/test_warnings.py -> build/lib.macosx-11.1-arm64-3.9/numpy/tests
            copying numpy/tests/test_matlib.py -> build/lib.macosx-11.1-arm64-3.9/numpy/tests
            copying numpy/tests/test_ctypeslib.py -> build/lib.macosx-11.1-arm64-3.9/numpy/tests
            copying numpy/tests/test_numpy_version.py -> build/lib.macosx-11.1-arm64-3.9/numpy/tests
            copying numpy/tests/__init__.py -> build/lib.macosx-11.1-arm64-3.9/numpy/tests
            copying numpy/tests/test_reloading.py -> build/lib.macosx-11.1-arm64-3.9/numpy/tests
            copying numpy/tests/test_public_api.py -> build/lib.macosx-11.1-arm64-3.9/numpy/tests
            copying numpy/tests/test_scripts.py -> build/lib.macosx-11.1-arm64-3.9/numpy/tests
            running build_clib
            customize UnixCCompiler
            customize UnixCCompiler using new_build_clib
            building 'npymath' library
            compiling C sources
            C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/michaelbennett/miniconda3/envs/snipar_test/include -arch arm64 -I/Users/michaelbennett/miniconda3/envs/snipar_test/include -fPIC -O2 -isystem /Users/michaelbennett/miniconda3/envs/snipar_test/include -arch arm64

            creating build/temp.macosx-11.1-arm64-3.9
            creating build/temp.macosx-11.1-arm64-3.9/numpy
            creating build/temp.macosx-11.1-arm64-3.9/numpy/core
            creating build/temp.macosx-11.1-arm64-3.9/numpy/core/src
            creating build/temp.macosx-11.1-arm64-3.9/numpy/core/src/npymath
            creating build/temp.macosx-11.1-arm64-3.9/build
            creating build/temp.macosx-11.1-arm64-3.9/build/src.macosx-11.1-arm64-3.9
            creating build/temp.macosx-11.1-arm64-3.9/build/src.macosx-11.1-arm64-3.9/numpy
            creating build/temp.macosx-11.1-arm64-3.9/build/src.macosx-11.1-arm64-3.9/numpy/core
            creating build/temp.macosx-11.1-arm64-3.9/build/src.macosx-11.1-arm64-3.9/numpy/core/src
            creating build/temp.macosx-11.1-arm64-3.9/build/src.macosx-11.1-arm64-3.9/numpy/core/src/npymath
            compile options: '-Ibuild/src.macosx-11.1-arm64-3.9/numpy/core/src/npymath -Inumpy/core/include -Ibuild/src.macosx-11.1-arm64-3.9/numpy/core/include/numpy -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/Users/michaelbennett/miniconda3/envs/snipar_test/include/python3.9 -Ibuild/src.macosx-11.1-arm64-3.9/numpy/core/src/common -Ibuild/src.macosx-11.1-arm64-3.9/numpy/core/src/npymath -c'
            clang: numpy/core/src/npymath/npy_math.c
            clang: build/src.macosx-11.1-arm64-3.9/numpy/core/src/npymath/ieee754.c
            clang: numpy/core/src/npymath/halffloat.c
            clang: build/src.macosx-11.1-arm64-3.9/numpy/core/src/npymath/npy_math_complex.c
            In file included from numpy/core/src/npymath/npy_math.c:9:
            numpy/core/src/npymath/npy_math_internal.h.src:490:21: warning: incompatible pointer types passing 'npy_longdouble *' (aka 'double *') to parameter of type 'long double *' [-Wincompatible-pointer-types]
                return modfl(x, iptr);
                                ^~~~
            /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/math.h:394:52: note: passing argument to parameter here
            extern long double modfl(long double, long double *);
                                                               ^
            1 warning generated.
            llvm-ar: adding 4 object files to build/temp.macosx-11.1-arm64-3.9/libnpymath.a
            error: Command "/var/folders/nz/j6p8yfhx1mv_0grj5xl4650h0000gp/T/abs_croot-q4vzracu/python-split_1649141351537/_build_env/bin/llvm-ar rcs build/temp.macosx-11.1-arm64-3.9/libnpymath.a build/temp.macosx-11.1-arm64-3.9/numpy/core/src/npymath/npy_math.o build/temp.macosx-11.1-arm64-3.9/build/src.macosx-11.1-arm64-3.9/numpy/core/src/npymath/ieee754.o build/temp.macosx-11.1-arm64-3.9/build/src.macosx-11.1-arm64-3.9/numpy/core/src/npymath/npy_math_complex.o build/temp.macosx-11.1-arm64-3.9/numpy/core/src/npymath/halffloat.o" failed with exit status 127
            [end of output]

        note: This error originates from a subprocess, and is likely not a problem with pip.
        ERROR: Failed building wheel for numpy
      Failed to build numpy
      ERROR: Could not build wheels for numpy, which is required to install pyproject.toml-based projects
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.