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AlexanderKroll / ESP

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Assistance Request for Creating 'all_sequences_esm1b_ts_mean.pt #10

Closed EasternCaveMan closed 11 months ago

EasternCaveMan commented 12 months ago

Dear Authors I hope that you are doing well. I have calculated ESM1b_ts and ESM1b vectors . in next setp I want to create all_sequences_esm1b_ts_mean.pt, However, I am uncertain about the steps involved in this process.

Could you kindly provide guidance on how to proceed with this task?

Your assistance is greatly appreciated.

Best regards, Vahid

AlexanderKroll commented 11 months ago

Dear Vahid,

I uploaded the python file "training_ESM1b_taskspecific_mean.py" to the folder "notebooks_and_code". It can be executed in the same way as the "training_ESM1b_taskspecific.py" to train the task-specific ESM-1b model. Does this answer your question?

Please note that the model ts_mean model is not very important for the overall process as it results in comparable but slightly worse results compared to the ESM-1b_ts model with classification token.

Best, Alex