Closed susheelbhanu closed 3 years ago
Hi @susheelbhanu! For the conda
installation, I would suggest removing -c akrinos
. EUKulele
is now available on bioconda
, which speeds up the installation! If it still doesn't work on your machine, though, the pip
install might be the way to go for you, given your conda
setup. Thanks for the queries!
Will give it a go - thank you!
@akrinos Just thought I'd leave this here for future reference. The pip installation
worked.
So, I exported the environment file. It's attached here. Hope it helps someone who may run into this. Had to rename it to .txt
from .yaml
so I could upload. ;)
Updated file here:
eukulele.txt
Thanks for that @susheelbhanu ! But note that if you do use the pip
installation, you will need a few other tools installed separately as well, which is the downside of that approach (but it tends to solve faster than conda
). Those dependencies are here, and should be sorted with conda install -c bioconda -c conda-forge blast busco=4.0.6 diamond transdecoder
via conda
(though newer BUSCO
should now work and the docs should be updated). Happy to help if anything goes wrong with the dependencies!
Thank you! I suppose one could update the environment file with the dependencies too.. Thanks again for the help!
Hi again..
I'm having trouble installing the tool via
conda
. As noted in one of the earlier issues, I updated conda and still the problems persists.I tried it on a different
high-mem
machine and it's been~11 hours
and the environment is still being solvedAny suggestions on how to speed up the process? Thank you!