Using multiple databases in the same run

[susheelbhanu]

Hi,

Is it possible to use multiple databases in the same run, i.e. something like the below?

EUKulele --sample_dir $(dirname {input}) -o {output[0]} -m mets --database phylodb, mmetsp

Or should it be run as follows:

EUKulele --sample_dir $(dirname {input}) -o {output[0]} -m mets --database phylodb --database mmetsp

Thank you, Susheel

[akrinos]

Hi @susheelbhanu ! Using multiple databases in this way is not currently supported, but it's certainly something we could consider adding in the future. For this particular example, mmetsp is contained within phylodb, so it will work to use phylodb alone!

[susheelbhanu]

Awesome, thank you @akrinos!