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AlexanderLabWHOI / EUKulele

Automatic eukaryotic taxonomic classification
MIT License
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Diamond did not complete successfully with rc code 1 Alignment did not complete successfully #56

Closed shanexuuu closed 1 year ago

shanexuuu commented 1 year ago

Hi,

I am using EUKulele v2.0.6 installed via mamba. The runing code is 

while read p;
do
EUKulele --CPUs 15 --sample_dir eukcc_metaeuk/"$p" -m mags -o Eukprot/"$p" --reference_dir /EUKulele_db/eukprot/eukprot --protein_extension fa;
done < bins.txt

However, this diamond issue exits, it says " Error: Database was built with a different version of Diamond and is incompatible."

I was wondering what version of diamond used for building databases (Eukprot, MMETSP, PhyloDB)? And would you have any advice for this?

Many thanks!

full_diamond_align_bin.245.err

diamond v0.9.24.125 | by Benjamin Buchfink buchfink@gmail.com Licensed under the GNU GPL https://www.gnu.org/licenses/gpl.txt Check http://github.com/bbuchfink/diamond for updates.

CPU threads: 48

Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: bin.245.fa/mags_full/diamond Opening the database... [0.004164s] Error: Database was built with a different version of Diamond and is incompatible.

shanexuuu commented 1 year ago

I tried redownloaded all databases by EUKulele v2.0.6 EUKulele download --database eukprot --reference_dir /EUKulele_db/eukprot Now seems all good!