Suppress opening of matplotlib figure opening

AlexanderLabWHOI / EUKulele

Automatic eukaryotic taxonomic classification

MIT License

27 stars 7 forks source link

Suppress opening of matplotlib figure opening #64

Open paulzierep opened 3 months ago

paulzierep commented 3 months ago

We are currently writing a wrapper for this tool in Galaxy. If plots are opened via matplotlib, the tool will stuck until the user closes the figures. Can this https://github.com/AlexanderLabWHOI/EUKulele/blob/9ecd10bc16355cde3f12c1f355b4fc0b3b7c153d/src/EUKulele/visualize_results.py#L389 be made optionally?

akrinos commented 3 months ago

Hi @paulzierep ! The code should include closing the figures, which does happen automatically for me when I use the tool. Have you experienced when running EUKulele that your figures remain open? I am hoping to revamp the visualization within EUKulele soon, which could include making the entire visualization routine optional if it's problematic for applications like these. Thanks for your interest!