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AlexanderLabWHOI / eukrhythmic

A metatranscriptomic pipeline optimized for the study of microeukaryotes.
MIT License
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How are isoforms handled? #50

Open halexand opened 3 years ago

halexand commented 3 years ago

Trinity returns a lot of isoforms in its output. How are these carried forward into the ultimate mega merge assembly?

For example, how would isoform 1 and 2 move forward through clustering steps? 

contig     ______A____ ... _________B______ ... _______C___ 
isoform 1  ______A____ _________B______ 
isoform 2  ______A____ _______C___
halexand commented 3 years ago

I think we might be able to figure this out from the trinity headers (not sure about velvet etc.)