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AlexandrovLab
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SigProfilerAssignment
Assignment of known mutational signatures to individual samples and individual somatic mutations
BSD 2-Clause "Simplified" License
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#131
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mdbarnesUCSD
closed
4 months ago
mdbarnesUCSD
commented
4 months ago
Added
Added CLI boolean handling to improve command-line interface usability.
Added new pytests for CLI to ensure correct handling of booleans.
Updated the README to reflect the new pytest additions.
Updated CI/CD pipelines to accommodate pytest changes.
Changed
Improved input_type value check mechanism to use .lower() before checking against values 'vcf' or 'matrix'.
Updated dependency from PyPDF2 to pypdf to increase compatibility and resolve installation issues on bioconda.
mdbarnesUCSD
commented
4 months ago
closes #127
Added
Changed