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AlexandrovLab / SigProfilerClusters

Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.
BSD 2-Clause "Simplified" License
11 stars 1 forks source link

Install issue #21

Closed cutleraging closed 11 months ago

cutleraging commented 11 months ago

Hello, I am having the following issue with installing this package in my environment

`$ pip install SigProfilerClusters Collecting SigProfilerClusters Downloading SigProfilerClusters-1.1.2-py3-none-any.whl.metadata (11 kB) Collecting matplotlib<3.5,>=3.3.0 (from SigProfilerClusters) Downloading matplotlib-3.4.3.tar.gz (37.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.9/37.9 MB 49.8 MB/s eta 0:00:00 Preparing metadata (setup.py) ... error error: subprocess-exited-with-error

× python setup.py egg_info did not run successfully. │ exit code: 1 ╰─> [16 lines of output] Traceback (most recent call last): File "", line 2, in File "", line 34, in File "/tmp/pip-install-q90iz707/matplotlib_e257a3b3ba18440caedc4fb8265f9362/setup.py", line 54, in version = versioneer.get_version() ^^^^^^^^^^^^^^^^^^^^^^^^ File "/tmp/pip-install-q90iz707/matplotlib_e257a3b3ba18440caedc4fb8265f9362/versioneer.py", line 1410, in get_version return get_versions()["version"] ^^^^^^^^^^^^^^ File "/tmp/pip-install-q90iz707/matplotlib_e257a3b3ba18440caedc4fb8265f9362/versioneer.py", line 1344, in get_versions cfg = get_config_from_root(root) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/tmp/pip-install-q90iz707/matplotlib_e257a3b3ba18440caedc4fb8265f9362/versioneer.py", line 401, in get_config_from_root parser = configparser.SafeConfigParser() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: module 'configparser' has no attribute 'SafeConfigParser'. Did you mean: 'RawConfigParser'? [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed

× Encountered error while generating package metadata. ╰─> See above for output.

note: This is an issue with the package mentioned above, not pip. hint: See above for details. `

Thanks, Ronnie

MousumyCSE commented 11 months ago

Hi @cutleragin,

Thanks for reaching out. Can I ask you which version of python you are using? We are working on updating python version. For now the suggestion will be to use python 3.8 or 3.9 and then retry to install the SigProfilerClusters tool.

Please let me know if you encounter any other issues.

Best, Mousumy

cutleraging commented 11 months ago

Thanks, this worked for me.