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AlexandrovLab / SigProfilerMatrixGenerator

SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
BSD 2-Clause "Simplified" License
101 stars 37 forks source link

Unable to download reference genome files #155

Closed Xiongshizheng closed 1 year ago

Xiongshizheng commented 1 year ago

I just started trying to deploy the SigProfilerCluster you posted on github, and I got the following error when executing the genInstall.install('GRCh37', bash=True)

Beginning installation. This may take up to 40 minutes to complete. ??? Linux ? Windows ????????????? ?????? Microsoft Store ??????: https://aka.ms/wslstore ??? Linux ? Windows ????????????? ?????? Microsoft Store ??????: https://aka.ms/wslstore tar: Error opening archive: Failed to open 'D:\Python\Anaconda\envs\sig\Lib\site-packages\SigProfilerMatrixGenerator/references/chromosomes/tsb/GRCh37.tar.gz' The ensembl ftp site is not currently responding.

hoping to get your answer！

mdbarnesUCSD commented 1 year ago

Hi @Xiongshizheng,

Please look at #154 and see if this resolves your issue. If you are still having difficulties, please post on that thread. Thanks!