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AlexandrovLab / SigProfilerSingleSample

SigProfilerSingleSample allows attributing a known set of mutational signatures to an individual sample. The tool identifies the activity of each signature in the sample and assigns the probability for each signature to cause a specific mutation type in the sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
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gzip VCF files #12

Closed ThomasGro closed 3 years ago

ThomasGro commented 3 years ago

Hi, I use a directory of *.vcf.gz as input but get "File format not supported". I there a possibility to have support for compressed VCF files as input. Thank you TG

marcos-diazg commented 3 years ago

Hi @ThomasGro,

Thanks a lot for your suggestion and sorry for the late reply. We will definitely consider it for future enhancements of our tool.

Best, Marcos