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AlexandrovLab / SigProfilerTopography

SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA replication, and DNA transcription on the activities of different mutational processes. SigProfilerTopography elucidates the unique topographical characteristics of mutational signatures.
BSD 2-Clause "Simplified" License
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AttributeError: module 'SigProfilerTopography.Topography' has no attribute 'install_nucleosome' #1

Closed pengbo233 closed 2 years ago

burcakotlu commented 2 years ago

Dear pengbo233,

Thanks for your interest in SigProflerTopography. Topography.py has install_nucleosome method. Are you using the latest SigProfilerTopography version?

Following the sample commands in Readme.md should work. $ python

from SigProfilerTopography import Topography as topography topography.install_nucleosome('GRCh37') topography.install_atac_seq('GRCh37') topography.install_repli_seq('GRCh37')

Please let me know if you have any problems.

Best wishes, Burcak

burcakotlu commented 2 years ago

Dear pengbo233,

I'm closing this issue.

After installing the latest version of SigProfilerTopography, if you are still having problems please let me know.

Best wishes, Burcak