Closed mbahmu25 closed 3 months ago
this is the full error msg
`---------------------------------------------------------------------------
_RemoteTraceback Traceback (most recent call last)
_RemoteTraceback:
"""
Traceback (most recent call last):
File "/home/genta/miniconda3/envs/sar/lib/python3.11/site-packages/joblib/externals/loky/process_executor.py", line 463, in _process_worker
r = call_item()
^^^^^^^^^^^
File "/home/genta/miniconda3/envs/sar/lib/python3.11/site-packages/joblib/externals/loky/process_executor.py", line 291, in call
return self.fn(*self.args, self.kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/genta/miniconda3/envs/sar/lib/python3.11/site-packages/joblib/parallel.py", line 589, in call
return [func(*args, *kwargs)
^^^^^^^^^^^^^^^^^^^^^^
File "/home/genta/miniconda3/envs/sar/lib/python3.11/site-packages/joblib/parallel.py", line 589, in
The above exception was the direct cause of the following exception:
FileNotFoundError Traceback (most recent call last) Cell In[28], line 1 ----> 1 sbas.compute_align(DEM)
File ~/gmtsar/pygmtsar/notebooks/pygmtsar/Stack_align.py:865, in Stack_align.compute_align(self, geometry, dates, n_jobs, degrees, joblib_aligning_backend, debug) 862 # prepare reference scene 863 #self.stack_ref() 864 with self.tqdm_joblib(tqdm(desc='Aligning Reference', total=len(subswaths))) as progress_bar: --> 865 joblib.Parallel(n_jobs=n_jobs, backend=joblib_backend)(joblib.delayed(self._align_ref_subswath)(subswath, debug=debug) for subswath in subswaths) 867 # prepare secondary images 868 with self.tqdm_joblib(tqdm(desc='Aligning Repeat', total=len(dates_rep)*len(subswaths))) as progress_bar: 869 # threading backend is the only one working inside Docker container to run multiple binaries in parallel
File ~/miniconda3/envs/sar/lib/python3.11/site-packages/joblib/parallel.py:1952, in Parallel.call(self, iterable)
1946 # The first item from the output is blank, but it makes the interpreter
1947 # progress until it enters the Try/Except block of the generator and
1948 # reach the first yield
statement. This starts the aynchronous
1949 # dispatch of the tasks to the workers.
1950 next(output)
-> 1952 return output if self.return_generator else list(output)
File ~/miniconda3/envs/sar/lib/python3.11/site-packages/joblib/parallel.py:1595, in Parallel._get_outputs(self, iterator, pre_dispatch) 1592 yield 1594 with self._backend.retrieval_context(): -> 1595 yield from self._retrieve() 1597 except GeneratorExit: 1598 # The generator has been garbage collected before being fully 1599 # consumed. This aborts the remaining tasks if possible and warn 1600 # the user if necessary. 1601 self._exception = True
File ~/miniconda3/envs/sar/lib/python3.11/site-packages/joblib/parallel.py:1699, in Parallel._retrieve(self)
1692 while self._wait_retrieval():
1693
1694 # If the callback thread of a worker has signaled that its task
1695 # triggered an exception, or if the retrieval loop has raised an
1696 # exception (e.g. GeneratorExit
), exit the loop and surface the
1697 # worker traceback.
1698 if self._aborting:
-> 1699 self._raise_error_fast()
1700 break
1702 # If the next job is not ready for retrieval yet, we just wait for
1703 # async callbacks to progress.
File ~/miniconda3/envs/sar/lib/python3.11/site-packages/joblib/parallel.py:1734, in Parallel._raise_error_fast(self) 1730 # If this error job exists, immediatly raise the error by 1731 # calling get_result. This job might not exists if abort has been 1732 # called directly or if the generator is gc'ed. 1733 if error_job is not None: -> 1734 error_job.get_result(self.timeout)
File ~/miniconda3/envs/sar/lib/python3.11/site-packages/joblib/parallel.py:736, in BatchCompletionCallBack.get_result(self, timeout) 730 backend = self.parallel._backend 732 if backend.supports_retrieve_callback: 733 # We assume that the result has already been retrieved by the 734 # callback thread, and is stored internally. It's just waiting to 735 # be returned. --> 736 return self._return_or_raise() 738 # For other backends, the main thread needs to run the retrieval step. 739 try:
File ~/miniconda3/envs/sar/lib/python3.11/site-packages/joblib/parallel.py:754, in BatchCompletionCallBack._return_or_raise(self) 752 try: 753 if self.status == TASK_ERROR: --> 754 raise self._result 755 return self._result 756 finally:
FileNotFoundError: [Errno 2] No such file or directory: 'raw_fogo/S1_20141108_073035_F1.PRM'`
But do you have installed GMTSAR binary tools?
yes, i already install it, with same step like in the colab or docker
i dont use docker, because i can't install (error) it :')
It's difficult to pinpoint the exact issue without any indication of why the required file is missing. However, it could be related to either the GMTSAR binaries being missing or improperly installed (can you execute them directly from the command line?) or due to the Python version being used (try using the same version as on Google Colab). I suggest using Docker Desktop software as the simplest solution. Otherwise, you may need to utilize PyGMTSAR's debugging features to investigate the problem further.
GMTSAR binary is working good, i test it using terminal. But when i backtrack the error i come into this line of code
it seems the module can't get the right path for metapath and datapath, i also test it by changing argv var into
'argv = ['make_s1a_tops path_to_xmlfile path_to_tiff Path_to_output 1']'
and it works but only for 1 image.
You can use Stack.compute_align(..., debug=True) for debugging. And have you defined the required environment variables as in the example notebooks?
ah, i found the solution, i change the argv to this
and it works, Thankyou Mr. Alexey.
*sorry for my bad english When i run sbas.computer_align(DEM) it gives me
"[ERRNO 2] no such file or directory : raw_fogo/{filename}.PRM
" i think it becauseself._make_s1a_tops(subswath,debug=debug)
didnt work correctyly can you help me how to fix this ?