Updated analysis: medullo subtyping misses WGS only samples as To be Classified

[jharenza]

What analysis module should be updated and why?

medulloblastoma-subtyping - missed WGS only samples

v21 %>%
  filter(cancer_group == "Medulloblastoma" & sample_type == "Tumor" &
           is.na(molecular_subtype)) %>%
  select(Kids_First_Biospecimen_ID, experimental_strategy, molecular_subtype)

# A tibble: 7 x 3
  Kids_First_Biospecimen_ID experimental_strategy molecular_subtype
  <chr>                     <chr>                 <chr>            
1 BS_3J4T2YYW               WGS                   NA               
2 BS_7F07M7JG               WGS                   NA               
3 BS_AG0BZN6F               WGS                   NA               
4 BS_HZNKSQ17               WGS                   NA               
5 BS_V6HKXX1Z               WGS                   NA               
6 BS_WP9J88EB               WGS                   NA               
7 BS_YYAPSA5P               WGS                   NA        

What changes need to be made? Please provide enough detail for another participant to make the update.

annotate these samples as to be classified

What input data should be used? Which data were used in the version being updated?

v21

When do you expect the revised analysis will be completed?

next week, if time?

Who will complete the updated analysis?

@komalsrathi

This is also not a huge deal if not added since they are To be classified, but wanted to track as an issue here

[komalsrathi]

Sure, will do. Can you add me as an assignee?

[jharenza]

Sure, will do. Can you add me as an assignee?

Done

[jharenza]

Closing with #1206