Merge the following files from V21 and add to s3://kf-openaccess-us-east-1-prd-pbta/data/pedcbio/ for @migbro to load to pedcbio
Somatic variant calls:
Merge pbta-snv-consensus-mutation.maf.tsv.gz and pbta-snv-scavenged-hotspots.maf.tsv.gz and deduplicate (some pbta-snv-scavenged-hotspots.maf.tsv.gz are contained within pbta-snv-consensus-mutation.maf.tsv.gz
Copy number calls:
Merge consensus_seg_annotated_cn_autosomes.tsv.gz and consensus_seg_annotated_cn_x_and_y.tsv.gzpbta-cnv-consensus.seg.gz already in bucket
Merge the following files from V21 and add to s3://kf-openaccess-us-east-1-prd-pbta/data/pedcbio/ for @migbro to load to pedcbio
Somatic variant calls: Merge
pbta-snv-consensus-mutation.maf.tsv.gz
andpbta-snv-scavenged-hotspots.maf.tsv.gz
and deduplicate (somepbta-snv-scavenged-hotspots.maf.tsv.gz
are contained withinpbta-snv-consensus-mutation.maf.tsv.gz
Copy number calls: Merge
consensus_seg_annotated_cn_autosomes.tsv.gz
andconsensus_seg_annotated_cn_x_and_y.tsv.gz
pbta-cnv-consensus.seg.gz
already in bucketRNAseq expression: Merge and collapse:
RNAseq fusion
pbta-fusion-putative-oncogenic.tsv
is already in the bucket@runjin326 will you work on this please?