AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Update TP53 classifier plots by broad histology and cancer group to fit new conventions #1205

Closed jaclyn-taroni closed 2 years ago

jaclyn-taroni commented 2 years ago

Purpose/implementation Section

This in essence addresses my comments here: https://github.com/AlexsLemonade/OpenPBTA-analysis/pull/1202#pullrequestreview-806135065 I'm also adding the script in #1202 to the module shell script and README.

I was going to add copying individual panels over to the figures/ directory but it looks like we haven't made a final decision about which panels are going where (specifically Figure 4 vs. Figure 5), so I've held off for now.

Documentation Checklist

jharenza commented 2 years ago

hi @jaclyn-taroni - can you rerun the script to plot the PDF here. This one seems to not have rendered.