The mapping-histology-labels.Rmd notebook assumes a specific data release: release-v21-20210820. It is very likely there will be more data releases, so the notebook should be more flexible.
What changes need to be made? Please provide enough detail for another participant to make the update.
Include an Rmarkdown parameter with the name of the data release. All releases should be named release-vX-20XXXXXX, where vX is the release version and 20XXXXXX the release date. The parameter could therefore either be the full release name, or just vX-20XXXXXX where the string "release" gets added on in the code.
Potential issue: If there are substantial changes in sample histologies in future releases, the code itself will likely need to be revisted.
What input data should be used? Which data were used in the version being updated?
Only the metadata file, pbta-histologies.tsv.
When do you expect the revised analysis will be completed?
sjspielman
commented
2 years ago
What analysis module should be updated and why?
The
mapping-histology-labels.Rmdnotebook assumes a specific data release:release-v21-20210820. It is very likely there will be more data releases, so the notebook should be more flexible.What changes need to be made? Please provide enough detail for another participant to make the update.
Include an Rmarkdown parameter with the name of the data release. All releases should be named
release-vX-20XXXXXX, wherevXis the release version and20XXXXXXthe release date. The parameter could therefore either be the full release name, or justvX-20XXXXXXwhere the string"release"gets added on in the code.Potential issue: If there are substantial changes in sample histologies in future releases, the code itself will likely need to be revisted.
What input data should be used? Which data were used in the version being updated?
Only the metadata file,
pbta-histologies.tsv.When do you expect the revised analysis will be completed?
1-2 days.
Who will complete the updated analysis?
@sjspielman