AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Add scripts/modules for generating correlation plots for TP53 scores #1237

Closed runjin326 closed 2 years ago

runjin326 commented 2 years ago

What are the scientific goals of the analysis?

Add two correlation plots: 1) TP53 scores vs. NormEXTEND score 2) TP53 scores vs. breakpoint density

What methods do you plan to use to accomplish the scientific goals?

Grab data from analysis modules or tables and plot the results out

What input data are required for this analysis?

NormEXTEND scores TP53 scores Breakpoint density of samples

How long do you expect is needed to complete the analysis? Will it be a multi-step analysis?

1 day

Who will complete the analysis (please add a GitHub handle here if relevant)?

@runjin326

What relevant scientific literature relates to this analysis?

N/A

sjspielman commented 2 years ago

Closed with #1239