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AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Complete manuscript figures #1282

Closed sjspielman closed 2 years ago

sjspielman commented 2 years ago

This Issue tracks status of completing manuscript figure panels and overall figures and adding them to figures/scripts/, figures/pdfs/, and as compiled panels.

See here: https://docs.google.com/spreadsheets/d/1RbHSHvY8IiSatiX2F1IQYgPs5YgMnRzDoVBt5kwaT50/edit?usp=sharing

jaclyn-taroni commented 2 years ago

@sjspielman is Fig 5C missing currently? I think we need a cp step in figures/ for this: https://github.com/AlexsLemonade/OpenPBTA-analysis/blob/master/analyses/immune-deconv/plots/cell_types-molecular_subtypes.pdf and, more generally, to run that module in that script. Going to acknowledge is could be in #1286

sjspielman commented 2 years ago

Ah yes good catch, will get on that today.

sjspielman commented 2 years ago

Noting Fig 5C is now present

sjspielman commented 2 years ago

Initial compilations have been completed. Closing in favor of tracking new changes in #1368, #1372, #1373