Key resources table

[sjspielman]

This PR addresses this OpenPBTA-manuscript issue and Key Resources table for software. Per this comment, this table needs to be supplementary (not embedded in Methods) since there are > 10, so I'm filing in this repository where the supplementary tables are tracked.

An excel file was compiled with 4 sheets:

• All R packages in the Dockerfile. This list was derived using this approach. This includes all the 3.6.0 base R packages
• All Python libraries in the Dockerfile. This list was manually compiled.
• All command line software in the Dockerfile. This list was manually compiled.
• All software used in the workflows repository. This was compiled based on information in that repo's README, but some tool versions are not provided so they are marked "UNKNOWN" in the spreadsheet.

Questions for reviewers

• I have not included the linux dependencies in the docker file, like this stuff.

  curl \
  bzip2 \
  zlib1g \
  libbz2-dev \
  liblzma-dev \
  libreadline-dev

• Any comments on the spreadsheet organization?
• Does anyone know where to track down the versions of tools used in the workflows? Similarly are there tools used in the workflows that are not described in the README that need to be added?

[sjspielman]

Noting that I messed up something in my branches. I'm closing this and will reopen.