AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project
Other
100 stars 67 forks source link

Update Figure 2 oncoprint panels #1315

Closed sjspielman closed 2 years ago

sjspielman commented 2 years ago

The figure 2 oncoprint primary-only panels have a mismatch between legends and panel: Cancer groups seen in legends are not always seen in the oncoprint figures directly. Specifically:

Other miscellaneous changes to be made to these panels:

jaclyn-taroni commented 2 years ago

This might be another good reason to address #1314, yea. I suspect this is the root of the issue!

jaclyn-taroni commented 2 years ago
  • Remove underscores from cancer_group and germline_sex_estimate row labels

For what it's worth, I drop these from my version of the compiled figure, which you can see an older version of here. It would not shock me if this was not technically possible.

sjspielman commented 2 years ago

It would not shock me if this was not technically possible.

Indeed, technically not possible - see https://github.com/AlexsLemonade/OpenPBTA-analysis/pull/1316

sjspielman commented 2 years ago

Closed with #1316