A few small code changes are implemented to facilitate compilation:
Font size and barplot outlines in the mutation co-occurrence plot
Point stroke size in the cnv/sv breaks plot, overall plot size export change, and added useDingbats=FALSE
Finally I remembered that this argument is the solution to funky symbol encodings!
Because those two plots are created in modules and copied into figures/, the figures in the modules are also accordingly updated and copied over to figures/pdfs/fig3/panels/.
This PR compiles Figure 3 into PDF and PNG.
A few small code changes are implemented to facilitate compilation:
useDingbats=FALSEBecause those two plots are created in modules and copied into
figures/, the figures in the modules are also accordingly updated and copied over tofigures/pdfs/fig3/panels/.