This PR adds compiled Figure S5, and performs some file reorganization to split out certain panels into Figure S6. The generate_figures.sh script and figures README are also updated to reflect organizational changes.
There are some code changes, primarily figure sizing, to allow for compilation as well. There was one substantial code change here - I changed the log(FPKM+1) to log(FPKM+1,2) when plotting TERT and TERC expression. This change does NOT result in a change to the statistics since this is only a transformation.
sjspielman
commented
2 years ago
This PR adds compiled Figure S5, and performs some file reorganization to split out certain panels into Figure S6. The
generate_figures.shscript and figures README are also updated to reflect organizational changes.There are some code changes, primarily figure sizing, to allow for compilation as well. There was one substantial code change here - I changed the
log(FPKM+1)tolog(FPKM+1,2)when plotting TERT and TERC expression. This change does NOT result in a change to the statistics since this is only a transformation.