AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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update/rerun MB subtyping (1 of N) #1376

Closed jharenza closed 2 years ago

jharenza commented 2 years ago

Purpose/implementation Section

What scientific question is your analysis addressing?

MB WGS To be classified samples were missing MB

What was your approach?

Updated code, rerun

What GitHub issue does your pull request address?

NA

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

Is there anything that you want to discuss further?

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Results

What types of results are included (e.g., table, figure)?

Table updated

What is your summary of the results?

Reproducibility Checklist

Documentation Checklist

jaclyn-taroni commented 2 years ago

Okay, I am going to merge this since we haven't had an image successfully push to Dockerhub upon merge since #1362 apparently? I can't run the tp53_nf1_score module successfully on the most recent image for this reason.

sjspielman commented 2 years ago

@jaclyn-taroni I've been meaning to ask you about this, re-dockerhub!! I have been using a locally built image for now.