AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Change logic to use module data when generating figures #1394

Closed jaclyn-taroni closed 2 years ago

jaclyn-taroni commented 2 years ago

⚠️ going into #1383.

We used to run the tp53_nf1_score module on the data in analyses/collapse-rnaseq. That's most likely because we were concerned about the collapsed data lagging the (uncollapsed) RSEM data included in the release. Because we'll run the collapse-rnaseq module during figure generation anyway, it could be handy to use logic that essentially says use the module data when you're generating figures. Functionally I don't expect this to make much of an impact.

jaclyn-taroni commented 2 years ago

In the interest of time, I will merge this in and we can have a chat about it in #1383 if need be