Updated analysis: tables/Key Resources - Githubissues

AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project

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Updated analysis: tables/Key Resources #1407

Closed jharenza closed 2 years ago

jharenza commented 2 years ago

What analysis module should be updated and why?

generate manuscript tables - add:

RSEM: https://github.com/d3b-center/OpenPBTA-workflows/blob/master/cwl/kfdrc_RNAseq_workflow.cwl
AnnotSV: https://github.com/d3b-center/OpenPBTA-workflows/pull/2
FusionAnnotator: https://github.com/d3b-center/OpenPBTA-workflows/issues/3

What changes need to be made? Please provide enough detail for another participant to make the update.

Add the above to the KR table for software

What input data should be used? Which data were used in the version being updated?

When do you expect the revised analysis will be completed?

this week

Who will complete the updated analysis?

@jharenza

jharenza commented 2 years ago

Closed with #1448