Generate script modified to include seg with status - Githubissues

AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project

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Generate script modified to include seg with status #1432

Closed runjin326 closed 2 years ago

runjin326 commented 2 years ago

Purpose/implementation Section

What scientific question is your analysis addressing?

add consensus_seg_with_status.tsv from scratch to scratch/analysis_files_for_release

What was your approach?

Add one line: cp ${scratch_dir}/consensus_seg_with_status.tsv ${compiled_dir}

What GitHub issue does your pull request address?

NA

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

NA

Is there anything that you want to discuss further?

No

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Yes

Results

What types of results are included (e.g., table, figure)?

NA

What is your summary of the results?

Although I didn't run the entire module but I re-ran this particular line and it ran as expected.

Reproducibility Checklist

[ ] The dependencies required to run the code in this pull request have been added to the project Dockerfile.
[ ] This analysis has been added to continuous integration.

Documentation Checklist

[ ] This analysis module has a README and it is up to date.
[ ] This analysis is recorded in the table in analyses/README.md and the entry is up to date.
[ ] The analytical code is documented and contains comments.