AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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run v22 compile subtypes (12/N) #1445

Closed jharenza closed 2 years ago

jharenza commented 2 years ago

Purpose/implementation Section

What scientific question is your analysis addressing?

Run

echo "Run compile subtyping"
bash ../analyses/molecular-subtyping-pathology/run-subtyping-aggregation.sh

What was your approach?

What GitHub issue does your pull request address?

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

Is there anything that you want to discuss further?

Note: 7316-1779 now has an NF-1 cancer predisposition, so gains a "NF1-germline" molecular subtype 7316-188 was Other (JXG) now cranio

It looks like these changes are expected, as many EPN subtypes were removed and there were some changes to path dx/path free text, tumor descriptor, etc.

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Results

What types of results are included (e.g., table, figure)?

What is your summary of the results?

Reproducibility Checklist

Documentation Checklist