AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project

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V22 CI updates for `consensus_seg_with_status.tsv` (2/N release) #1449

Closed jharenza closed 2 years ago

jharenza commented 2 years ago

Purpose/implementation Section

What scientific question is your analysis addressing?

Add consensus_seg_with_status.tsv to subsetting

What was your approach?

What GitHub issue does your pull request address?

1426

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

Is there anything that you want to discuss further?

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Results

What types of results are included (e.g., table, figure)?

What is your summary of the results?

Reproducibility Checklist

[ ] The dependencies required to run the code in this pull request have been added to the project Dockerfile.
[ ] This analysis has been added to continuous integration.

Documentation Checklist

[ ] This analysis module has a README and it is up to date.
[ ] This analysis is recorded in the table in analyses/README.md and the entry is up to date.
[ ] The analytical code is documented and contains comments.

jharenza commented 2 years ago

@jaclyn-taroni and @migbro, we are in business!

migbro commented 2 years ago

@jharenza Great to hear! I will kill that ec2 instance then

jaclyn-taroni commented 2 years ago

This module is upstream of CI and doesn't get tested. Merging without it!