This PR re-runs the telomerase-activity-prediction module under V22.
There are some expected plot changes and some results changes, but the only results changes are associated with LGG groups, consistent with the V22 changes.
I additionally slightly modified the run script for this module by adding an environment variable OPENPBTA_RUN_FIGURES, which has also been added to figures/generate_figures.sh. This variable will help to re-run only the figure-relevant bits moving forward, but the default value runs the full module so the Circle CI yaml config doesn't need to be modified. When adding this into figures/generate_figures.sh, I noticed another environment variable tacked onto collapse-rnaseq that simply doesn't exist so I deleted it (OPENPBTA_TP53_FIGURES=1).
This PR re-runs the
telomerase-activity-predictionmodule under V22.There are some expected plot changes and some results changes, but the only results changes are associated with LGG groups, consistent with the V22 changes.
I additionally slightly modified the run script for this module by adding an environment variable
OPENPBTA_RUN_FIGURES, which has also been added tofigures/generate_figures.sh. This variable will help to re-run only the figure-relevant bits moving forward, but the default value runs the full module so the Circle CI yaml config doesn't need to be modified. When adding this intofigures/generate_figures.sh, I noticed another environment variable tacked ontocollapse-rnaseqthat simply doesn't exist so I deleted it (OPENPBTA_TP53_FIGURES=1).